4.6 Review

Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions

Related references

Note: Only part of the references are listed.
Review Microbiology

The ancestral and industrialized gut microbiota and implications for human health

Erica D. Sonnenburg et al.

NATURE REVIEWS MICROBIOLOGY (2019)

Article Multidisciplinary Sciences

The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life

Klaudyna Borewicz et al.

SCIENTIFIC REPORTS (2019)

Article Nutrition & Dietetics

Breast Milk Microbiota Is Shaped by Mode of Delivery and Intrapartum Antibiotic Exposure

Henriina Hermansson et al.

FRONTIERS IN NUTRITION (2019)

Article Gastroenterology & Hepatology

Links between environment, diet, and the hunter-gatherer microbiome

Gabriela K. Fragiadakis et al.

GUT MICROBES (2019)

Article Microbiology

Disbiome database: linking the microbiome to disease

Yorick Janssens et al.

BMC MICROBIOLOGY (2018)

Review Microbiology

The Impact of Dietary Fiber on Gut Microbiota in Host Health and Disease

Kassem Makki et al.

CELL HOST & MICROBE (2018)

Review Biochemical Research Methods

To engraft or not to engraft: an ecological framework for gut microbiome modulation with live microbes

Jens Walter et al.

CURRENT OPINION IN BIOTECHNOLOGY (2018)

Review Gastroenterology & Hepatology

Role of priority effects in the early-life assembly of the gut microbiota

Daniel Sprockett et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2018)

Review Cardiac & Cardiovascular Systems

Preterm Delivery and Future Risk of Maternal Cardiovascular Disease: A Systematic Review and Meta-Analysis

Pensee Wu et al.

JOURNAL OF THE AMERICAN HEART ASSOCIATION (2018)

Review Biochemistry & Molecular Biology

Microbiome: Focus on Causation and Mechanism

Michael A. Fischbach

Article Multidisciplinary Sciences

Environment dominates over host genetics in shaping human gut microbiota

Daphna Rothschild et al.

NATURE (2018)

Article Biochemistry & Molecular Biology

Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography

Melanie Deschasaux et al.

NATURE MEDICINE (2018)

Review Endocrinology & Metabolism

Prospects for primary prevention of type 1 diabetes by restoring a disappearing microbe

Richard Insel et al.

PEDIATRIC DIABETES (2018)

Editorial Material Genetics & Heredity

Causality in dietary interventions-building a case for gut microbiota

Yan Y. Lam et al.

GENOME MEDICINE (2018)

Article Biochemistry & Molecular Biology

US Immigration Westernizes the Human Gut Microbiome

Pajau Vangay et al.

Article Multidisciplinary Sciences

Meta-analysis of effects of exclusive breastfeeding on infant gut microbiota across populations

Nhan T. Ho et al.

NATURE COMMUNICATIONS (2018)

Article Microbiology

Recovery of gut microbiota of healthy adults following antibiotic exposure

Albert Palleja et al.

NATURE MICROBIOLOGY (2018)

Review Medicine, General & Internal

Strain-Specificity and Disease-Specificity of Probiotic Efficacy: A Systematic Review and Meta-Analysis

Lynne V. McFarland et al.

FRONTIERS IN MEDICINE (2018)

Review Immunology

Causal effects of the microbiota on immune-mediated diseases

June L. Round et al.

SCIENCE IMMUNOLOGY (2018)

Letter Gastroenterology & Hepatology

Stool frequency is associated with gut microbiota composition

Fatemeh Hadizadeh et al.

Article Gastroenterology & Hepatology

European consensus conference on faecal microbiota transplantation in clinical practice

Giovanni Cammarota et al.

Article Multidisciplinary Sciences

The evolution of the host microbiome as an ecosystem on a leash

Kevin R. Foster et al.

NATURE (2017)

Article Multidisciplinary Sciences

Moving beyond microbiome-wide associations to causal microbe identification

Neeraj K. Surana et al.

NATURE (2017)

Article Biotechnology & Applied Microbiology

Towards standards for human fecal sample processing in metagenomic studies

Paul I. Costea et al.

NATURE BIOTECHNOLOGY (2017)

Article Gastroenterology & Hepatology

The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics

Glenn R. Gibson et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2017)

Article Nutrition & Dietetics

Recent Development of Prebiotic Research-Statement from an Expert Workshop

Giorgio La Fata et al.

NUTRIENTS (2017)

Article Nutrition & Dietetics

Oligofructose Provides Laxation for Irregularity Associated with Low Fiber Intake

Randal K. Buddington et al.

NUTRIENTS (2017)

Article Medicine, General & Internal

Cohort profile: the Healthy Life in an Urban Setting (HELIUS) study in Amsterdam, The Netherlands

Marieke B. Snijder et al.

BMJ OPEN (2017)

Review Microbiology

The impact of nutrition on intestinal bacterial communities

Harry J. Flint et al.

CURRENT OPINION IN MICROBIOLOGY (2017)

Review Clinical Neurology

The Gut Microbiome in Human Neurological Disease: A Review

Helen Tremlett et al.

ANNALS OF NEUROLOGY (2017)

Review Gastroenterology & Hepatology

Dietary fiber and prebiotics and the gastrointestinal microbiota

Hannah D. Holscher

GUT MICROBES (2017)

Editorial Material Medicine, General & Internal

Biomarkers and Surrogate Endpoints Developing Common Terminology and Definitions

Melissa A. Robb et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2016)

Article Multidisciplinary Sciences

Population-level analysis of gut microbiome variation

Gwen Falony et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Alterations of the human gut microbiome in multiple sclerosis

Sushrut Jangi et al.

NATURE COMMUNICATIONS (2016)

Review Genetics & Heredity

The healthy human microbiome

Jason Lloyd-Price et al.

GENOME MEDICINE (2016)

Article Microbiology

Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut

Henrik M. Roager et al.

NATURE MICROBIOLOGY (2016)

Article Microbiology

Quantitative Imaging of Gut Microbiota Spatial Organization

Kristen A. Earle et al.

CELL HOST & MICROBE (2015)

Article Medicine, General & Internal

Gut Microbiota in Multiple Sclerosis: Possible Influence of Immunomodulators

Brandi L. Cantarel et al.

JOURNAL OF INVESTIGATIVE MEDICINE (2015)

Article Gastroenterology & Hepatology

Towards a more comprehensive concept for prebiotics

Laure B. Bindels et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2015)

Review Biochemistry & Molecular Biology

The infant microbiome development: mom matters

Noel T. Mueller et al.

TRENDS IN MOLECULAR MEDICINE (2015)

Article Biotechnology & Applied Microbiology

Temporal and technical variability of human gut metagenomes

Anita Y. Voigt et al.

GENOME BIOLOGY (2015)

Article Gastroenterology & Hepatology

Effects of Wheat Bran Extract Containing Arabinoxylan Oligosaccharides on Gastrointestinal Parameters in Healthy Preadolescent Children

Isabelle E. J. A. Francois et al.

JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION (2014)

Article Food Science & Technology

High dose of prebiotics reduces fecal water cytotoxicity in healthy subjects

Karen Windey et al.

MOLECULAR NUTRITION & FOOD RESEARCH (2014)

Article Multidisciplinary Sciences

Diet rapidly and reproducibly alters the human gut microbiome

Lawrence A. David et al.

NATURE (2014)

Article Nutrition & Dietetics

CODEX-aligned dietary fiber definitions help to bridge the 'fiber gap'

Julie Miller Jones

NUTRITION JOURNAL (2014)

Article Medicine, General & Internal

Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months

Meghan B. Azad et al.

CANADIAN MEDICAL ASSOCIATION JOURNAL (2013)

Review Immunology

Intestinal colonization resistance

Trevor D. Lawley et al.

IMMUNOLOGY (2013)

Article Biotechnology & Applied Microbiology

Selective carbohydrate utilization by lactobacilli and bifidobacteria

D. Watson et al.

JOURNAL OF APPLIED MICROBIOLOGY (2013)

Article Multidisciplinary Sciences

Genomic variation landscape of the human gut microbiome

Siegfried Schloissnig et al.

NATURE (2013)

Review Biochemistry & Molecular Biology

Development of intestinal microbiota in infants and its impact on health

Sebastien Matamoros et al.

TRENDS IN MICROBIOLOGY (2013)

Article Infectious Diseases

Human milk oligosaccharide consumption by intestinal microbiota

A. Marcobal et al.

CLINICAL MICROBIOLOGY AND INFECTION (2012)

Review Multidisciplinary Sciences

Diversity, stability and resilience of the human gut microbiota

Catherine A. Lozupone et al.

NATURE (2012)

Article Multidisciplinary Sciences

Structure, function and diversity of the healthy human microbiome

Curtis Huttenhower et al.

NATURE (2012)

Article Nutrition & Dietetics

High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health

Wendy R. Russell et al.

AMERICAN JOURNAL OF CLINICAL NUTRITION (2011)

Article Multidisciplinary Sciences

Succession of microbial consortia in the developing infant gut microbiome

Jeremy E. Koenig et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biotechnology & Applied Microbiology

Moving pictures of the human microbiome

J. Gregory Caporaso et al.

GENOME BIOLOGY (2011)

Article Food Science & Technology

Persistence of probiotic strains in the gastrointestinal tract when administered as capsules, yoghurt, or cheese

Maija Saxelin et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2010)

Review Biology

CONCEPTUAL SYNTHESIS IN COMMUNITY ECOLOGY

Mark Vellend

QUARTERLY REVIEW OF BIOLOGY (2010)

Article Immunology

Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

Dionysios A. Antonopoulos et al.

INFECTION AND IMMUNITY (2009)

Article Gastroenterology & Hepatology

Early-life exposures associated with antibiotic use and risk of subsequent Crohn's disease

Hans Hildebrand et al.

SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY (2008)

Article Biochemistry & Molecular Biology

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

Les Dethlefsen et al.

PLOS BIOLOGY (2008)

Article Public, Environmental & Occupational Health

Dietary intake measurements

IHE Rutishauser

PUBLIC HEALTH NUTRITION (2005)

Review Agriculture, Dairy & Animal Science

In vitro microbial inoculum: A review of its function and properties

FL Mould et al.

ANIMAL FEED SCIENCE AND TECHNOLOGY (2005)

Article Biotechnology & Applied Microbiology

Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20

GW Tannock et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)