Journal
BIOINFORMATICS
Volume 36, Issue 4, Pages 1303-1304Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btz715
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Funding
- National Institutes of Health [R35-GM130151, R01HG006677]
- U.S. Army Research Office [W911NF-14-1-0490]
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A Summary: Pavian is a web application for exploring classification results from metagenomics experiments. With Pavian, researchers can analyze, visualize and transform results from various classifiers-such as Kraken, Centrifuge and MethaPhlAn-using interactive data tables, heatmaps and Sankey flow diagrams. An interactive alignment coverage viewer can help in the validation of matches to a particular genome, which can be crucial when using metagenomics experiments for pathogen detection.
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