Related references
Note: Only part of the references are listed.A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
Matthew G. Johnson et al.
SYSTEMATIC BIOLOGY (2019)
Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics
Etienne Leveille-Bourret et al.
SYSTEMATIC BIOLOGY (2018)
Gene tree parsimony for incomplete gene trees: addressing true biological loss
Md Shamsuzzoha Bayzid et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2018)
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Chao Zhang et al.
BMC BIOINFORMATICS (2018)
A nuclear Xdh phylogenetic analysis of yams (Dioscorea: Dioscoreaceae) congruent with plastid trees reveals a new Neotropical lineage
Juan Viruel et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2018)
Time calibrated tree of Dioscorea (Dioscoreaceae) indicates four origins of yams in the Neotropics since the Eocene
Ricardo S. Couto et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2018)
Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above
Tamara Villaverde et al.
NEW PHYTOLOGIST (2018)
Practical considerations for plant phylogenomics
Michael R. McKain et al.
APPLICATIONS IN PLANT SCIENCES (2018)
Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics
Mohammad Vatanparast et al.
APPLICATIONS IN PLANT SCIENCES (2018)
Comparison of taxon-specific versus general locus sets for targeted sequence capture in plant phylogenomics
John H. Chau et al.
APPLICATIONS IN PLANT SCIENCES (2018)
Transcriptome analysis of Dioscorea zingiberensis identifies genes involved in diosgenin biosynthesis
Wenping Hua et al.
GENES & GENOMICS (2017)
Targeted NGS for species level phylogenomics: made to measure'' or one size fits all''?
Malvina Kadlec et al.
PEERJ (2017)
A footprint of desiccation tolerance in the genome of Xerophyiita viscosa
Maria-Ceclia D. Costa et al.
NATURE PLANTS (2017)
Late Cretaceous-Early Eocene origin of yams (Dioscorea, Dioscoreaceae) in the Laurasian Palaearctic and their subsequent Oligocene-Miocene diversification
Juan Viruel et al.
JOURNAL OF BIOGEOGRAPHY (2016)
Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)
Roswitha Schmickl et al.
MOLECULAR ECOLOGY RESOURCES (2016)
DNA barcoding of the main cultivated yams and selected wild species in the genus Dioscorea
Gezahegn Girma et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2016)
Diversification into novel habitats in the Africa clade of Dioscorea (Dioscoreaceae): erect habit and elephant's foot tubers
Olivier Maurin et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Plastid phylogenetics of Oceania yams (Dioscorea spp., Dioscoreaceae) reveals natural interspecific hybridization of the greater yam (D.alata)
Hana Chair et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
Erfan Sayyari et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Inconsistency of Species Tree Methods under Gene Flow
Claudia Solis-Lemus et al.
SYSTEMATIC BIOLOGY (2016)
Retrieval of hundreds of nuclear loci from herbarium specimens
Michelle L. Hart et al.
TAXON (2016)
HYBPIPER: EXTRACTING CODING SEQUENCE AND INTRONS FOR PHYLOGENETICS FROM HIGH-THROUGHP UT SEQUENCING READS USING TARGET ENRICHMENT
Matthew G. Johnson et al.
APPLICATIONS IN PLANT SCIENCES (2016)
Revisiting the Zingiberales: using multiplexed exon capture to resolve ancient and recent phylogenetic splits in a charismatic plant lineage
Chodon Sass et al.
PEERJ (2016)
AMAS: a fast tool for alignment manipulation and computing of summary statistics
Marek L. Borowiec
PEERJ (2016)
Transciptome analysis reveals flavonoid biosynthesis regulation and simple sequence repeats in yam (Dioscorea alata L.) tubers
Zhi-Gang Wu et al.
BMC GENOMICS (2015)
Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae)
James A. Nicholls et al.
FRONTIERS IN PLANT SCIENCE (2015)
MARKERMINER 1.0: A NEW APPLICATION FOR PHYLOGENETIC MARKER DEVELOPMENT USING ANGIOSPERM TRANSCRIPTOMES
Srikar Chamala et al.
APPLICATIONS IN PLANT SCIENCES (2015)
A PROTOCOL FOR TARGETED ENRICHMENT OF INTRON-CONTAINING SEQUENCE MARKERS FOR RECENT RADIATIONS: A PHYLOGENOMIC EXAMPLE FROM HEUCHERA (SAXIFRAGACEAE)
Ryan A. Folk et al.
APPLICATIONS IN PLANT SCIENCES (2015)
De novo Transcriptome Assembly and the Putative Biosynthetic Pathway of Steroidal Sapogenins of Dioscorea composita
Xia Wang et al.
PLOS ONE (2015)
AliView: a fast and lightweight alignment viewer and editor for large datasets
Anders Larsson
BIOINFORMATICS (2014)
ASTRAL: genome-scale coalescent-based species tree estimation
S. Mirarab et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Phylotranscriptomic analysis of the origin and early diversification of land plants
Norman J. Wickett et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Ecological and evolutionary significance of genomic GC content diversity in monocots
Petr Smarda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Next-generation sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams
Gezahegn Girma et al.
THEORETICAL AND APPLIED GENETICS (2014)
Adapting Agriculture to Climate Change: A Global Initiative to Collect, Conserve, and Use Crop Wild Relatives
Hannes Dempewolf et al.
AGROECOLOGY AND SUSTAINABLE FOOD SYSTEMS (2014)
HYB-SEQ: COMBINING TARGET ENRICHMENT AND GENOME SKIMMING FOR PLANT PHYLOGENOMICS
Kevin Weitemier et al.
APPLICATIONS IN PLANT SCIENCES (2014)
A TARGET ENRICHMENT METHOD FOR GATHERING PHYLOGENETIC INFORMATION FROM HUNDREDS OF LOCI: AN EXAMPLE FROM THE COMPOSITAE
Jennifer R. Mandel et al.
APPLICATIONS IN PLANT SCIENCES (2014)
High-Throughput Genomic Data in Systematics and Phylogenetics
Emily Moriarty Lemmon et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)
A prioritized crop wild relative inventory to help underpin global food security
Holly Vincent et al.
BIOLOGICAL CONSERVATION (2013)
Molecular phylogeny of Dioscorea (Dioscoreaceae) in East and Southeast Asia
K. -M. Hsu et al.
BLUMEA (2013)
New reports of nuclear DNA content for 66 traditional Chinese medicinal plant taxa in China
Linlin Zhang et al.
CARYOLOGIA (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
Phylogenetic relationship of wild and cultivated yam species (Dioscorea spp.) of India inferred from PCR-RFLP analysis of two cpDNA loci
Papiya Mukherjee et al.
PLANT SYSTEMATICS AND EVOLUTION (2013)
Mining the Biodiversity of Plants: A Revolution in the Making
Vincenzo De Luca et al.
SCIENCE (2012)
SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
Gaurav Vaidya et al.
CLADISTICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Crops that feed the World 1. Yams Yams for income and food security
Robert Asiedu et al.
FOOD SECURITY (2010)
The Role of Hybridization in Plant Speciation
Pamela S. Soltis et al.
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Calculating bootstrap probabilities of phylogeny using multilocus sequence data
Tae-Kun Seo
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Dealing with incongruence in phylogenomic analyses
Nicolas Galtier et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
Genetic diversity of the greater yam (Dioscorea alata L.) and relatedness to Dioscorea nummularia Lam. and Dioscorea transversa Br. as revealed with AFLP markers
R Malapa et al.
GENETIC RESOURCES AND CROP EVOLUTION (2005)
A plastid gene phylogeny of the yam genus, Dioscorea:: Roots, fruits and Madagascar
P Wilkin et al.
SYSTEMATIC BOTANY (2005)
PCR marker-based analysis of wild and cultivated yams (Dioscorea spp.) in Nigeria:: Genetic relationships and implications for ex situ conservation
HD Mignouna et al.
GENETIC RESOURCES AND CROP EVOLUTION (2005)
Use of cpSSRs for the characterisation of yam phylogeny in Benin
H Chaïr et al.
GENOME (2005)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)