Related references
Note: Only part of the references are listed.Host-Specific Adaptive Diversification of Crohn's Disease-Associated Adherent-Invasive Escherichia coli
Wael Elhenawy et al.
CELL HOST & MICROBE (2019)
Malassezia Is Associated with Crohn's Disease and Exacerbates Colitis in Mouse Models
Jose J. Limon et al.
CELL HOST & MICROBE (2019)
A Diet Low in Red and Processed Meat Does Not Reduce Rate of Crohn's Disease Flares
Lindsey Albenberg et al.
GASTROENTEROLOGY (2019)
A defined commensal consortium elicits CD8 T cells and anti-cancer immunity
Takeshi Tanoue et al.
NATURE (2019)
Clinical and biological predictors of response to standardised paediatric colitis therapy (PROTECT): a multicentre inception cohort study
Jeffrey S. Hyams et al.
LANCET (2019)
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Jason Lloyd-Price et al.
NATURE (2019)
Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice
Graham J. Britton et al.
IMMUNITY (2019)
Microbial network disturbances in relapsing refractory Crohn's disease
Bahtiyar Yilmaz et al.
NATURE MEDICINE (2019)
Gut microbiome structure and metabolic activity in inflammatory bowel disease
Eric A. Franzosa et al.
NATURE MICROBIOLOGY (2019)
Insights into the role of fecal microbiota transplantation for the treatment of inflammatory bowel disease
Alexander N. Levy et al.
THERAPEUTIC ADVANCES IN GASTROENTEROLOGY (2019)
Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease
Floris Imhann et al.
GUT (2018)
Adherent-invasive Escherichia coli in inflammatory bowel disease
Carolina Palmela et al.
GUT (2018)
Alterations in lipid, amino acid, and energy metabolism distinguish Crohn's disease from ulcerative colitis and control subjects by serum metabolomic profiling
Elizabeth A. Scoville et al.
METABOLOMICS (2018)
Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
Christopher S. Smillie et al.
CELL HOST & MICROBE (2018)
Interactions Between Diet and the Intestinal Microbiota Alter Intestinal Permeability and Colitis Severity in Mice
Sean R. Llewellyn et al.
GASTROENTEROLOGY (2018)
Elevated circulating levels of succinate in human obesity are linked to specific gut microbiota
Carolina Serena et al.
ISME JOURNAL (2018)
C1orf106 is a colitis risk gene that regulates stability of epithelial adherens junctions
Vishnu Mohanan et al.
SCIENCE (2018)
CX3CR1+ mononuclear phagocytes control immunity to intestinal fungi
Irina Leonardi et al.
SCIENCE (2018)
Tropism for tuft cells determines immune promotion of norovirus pathogenesis
Craig B. Wilen et al.
SCIENCE (2018)
Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn's Disease Patients
Matthew K. Doherty et al.
MBIO (2018)
Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
Melanie Schirmer et al.
NATURE MICROBIOLOGY (2018)
Innate and adaptive lymphocytes sequentially shape the gut microbiota and lipid metabolism
Kairui Mao et al.
NATURE (2018)
Precision editing of the gut microbiota ameliorates colitis
Wenhan Zhu et al.
NATURE (2018)
Environment dominates over host genetics in shaping human gut microbiota
Daphna Rothschild et al.
NATURE (2018)
Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course
Melanie Schirmer et al.
CELL HOST & MICROBE (2018)
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
Arnau Vich Vila et al.
SCIENCE TRANSLATIONAL MEDICINE (2018)
Fecal chromogranins and secretogranins are linked to the fecal and mucosal intestinal bacterial composition of IBS patients and healthy subjects
Johanna Sundin et al.
SCIENTIFIC REPORTS (2018)
Fungal microbiota dysbiosis in IBD
Harry Sokol et al.
GUT (2017)
The Xenobiotic Transporter Mdr1 Enforces T Cell Homeostasis in the Presence of Intestinal Bile Acids
Wei Cao et al.
IMMUNITY (2017)
Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics
Mireia Lopez-Siles et al.
ISME JOURNAL (2017)
Uncultivated microbes in need of their own taxonomy
Konstantinos T. Konstantinidis et al.
ISME JOURNAL (2017)
P478 The current place of probiotics in treatment of pouchitis: systematic review
L. Lichtenstein et al.
Journal of Crohns & Colitis (2017)
Faecal Microbiota Transplantation for Inflammatory Bowel Disease: A Systematic Review and Meta-analysis
Sudarshan Paramsothy et al.
JOURNAL OF CROHNS & COLITIS (2017)
Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study
Subra Kugathasan et al.
LANCET (2017)
Fine-mapping inflammatory bowel disease loci to single-variant resolution
Hailiang Huang et al.
NATURE (2017)
Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children
Guoyan Zhao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation
Koji Atarashi et al.
SCIENCE (2017)
A member of the gut mycobiota modulates host purine metabolism exacerbating colitis in mice
Tyson R. Chiaro et al.
SCIENCE TRANSLATIONAL MEDICINE (2017)
Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation
Marta Wlodarska et al.
CELL HOST & MICROBE (2017)
Gut Microbiome Function Predicts Response to Anti-integrin Biologic Therapy in Inflammatory Bowel Diseases
Ashwin N. Ananthakrishnan et al.
CELL HOST & MICROBE (2017)
Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
Monika Schaubeck et al.
GUT (2016)
Donor Species Richness Determines Faecal Microbiota Transplantation Success in Inflammatory Bowel Disease
Severine Vermeire et al.
JOURNAL OF CROHNS & COLITIS (2016)
Butyrate enhances antibacterial effects while suppressing other features of alternative activation in IL-4-induced macrophages
Maria R. Fernando et al.
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2016)
Signaling in Host-Associated Microbial Communities
Michael A. Fischbach et al.
CELL (2016)
Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
Tommi Vatanen et al.
CELL (2016)
Microbiota-Produced Succinate Improves Glucose Homeostasis via Intestinal Gluconeogenesis
Filipe De Vadder et al.
CELL METABOLISM (2016)
Gut Virome and Inflammatory Bowel Disease
Loris R. Lopetuso et al.
INFLAMMATORY BOWEL DISEASES (2016)
Increased Intestinal Microbial Diversity Following Fecal Microbiota Transplant for Active Crohn's Disease
Byron P. Vaughn et al.
INFLAMMATORY BOWEL DISEASES (2016)
Fostering Inflammatory Bowel Disease: Sphingolipid Strategies to Join Forces
Loubna Abdel Hadi et al.
MEDIATORS OF INFLAMMATION (2016)
CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands
Bruno Lamas et al.
NATURE MEDICINE (2016)
Neonatal gut microbiota associates with childhood multisensitized atopy and T cell differentiation
Kei E. Fujimura et al.
NATURE MEDICINE (2016)
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
Alexandra Zhernakova et al.
SCIENCE (2016)
Antibody markers in the diagnosis of inflammatory bowel disease
Keiichi Mitsuyama et al.
WORLD JOURNAL OF GASTROENTEROLOGY (2016)
A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients
Jonathan P. Jacobs et al.
CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY (2016)
Fecal Microbiota in Pediatric Inflammatory Bowel Disease and Its Relation to Inflammation
Kaija-Leena Kolho et al.
AMERICAN JOURNAL OF GASTROENTEROLOGY (2015)
Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis
Jessica M. Yano et al.
CELL (2015)
Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling
Maayan Levy et al.
CELL (2015)
Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
Jason M. Norman et al.
CELL (2015)
Th17 Cell Induction by Adhesion of Microbes to Intestinal Epithelial Cells
Koji Atarashi et al.
CELL (2015)
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
Fredrik Backhed et al.
CELL HOST & MICROBE (2015)
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease
James D. Lewis et al.
CELL HOST & MICROBE (2015)
Gastrointestinal Autoimmunity Associated With Loss of Central Tolerance to Enteric α-Defensins
Jan Dobes et al.
GASTROENTEROLOGY (2015)
Diet in the Pathogenesis and Treatment of Inflammatory Bowel Diseases
Dale Lee et al.
GASTROENTEROLOGY (2015)
Cytokines, IBD, and Colitis-associated Cancer
Ralph Francescone et al.
INFLAMMATORY BOWEL DISEASES (2015)
Vertically transmitted faecal IgA levels determine extra-chromosomal phenotypic variation
Clara Moon et al.
NATURE (2015)
A biosynthetic pathway for a prominent class of microbiota-derived bile acids
A. Sloan Devlin et al.
NATURE CHEMICAL BIOLOGY (2015)
Dietary management of IBD-insights and advice
Emma P. Halmos et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2015)
Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon
Noortje Ijssennagger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
MICROBIOME Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples
Tal Korem et al.
SCIENCE (2015)
Small molecules from the human microbiota
Mohamed S. Donia et al.
SCIENCE (2015)
Early infancy microbial and metabolic alterations affect risk of childhood asthma
Marie-Claire Arrieta et al.
SCIENCE TRANSLATIONAL MEDICINE (2015)
T Lymphocyte Dynamics in Inflammatory Bowel Diseases: Role of the Microbiome
C. B. Larmonier et al.
BIOMED RESEARCH INTERNATIONAL (2015)
Long side-to-side isoperistaltic strictureplasty over the ileocecal valve: a prospective analysis of feasibility and medium term outcome
A. de Buck van Overstraeten et al.
JOURNAL OF CROHNS & COLITIS (2015)
Immunoglobulin A Coating Identifies Colitogenic Bacteria in Inflammatory Bowel Disease
Noah W. Palm et al.
CELL (2014)
Sphingolipids from a Symbiotic Microbe Regulate Homeostasis of Host Intestinal Natural Killer T Cells
Dingding An et al.
CELL (2014)
Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine
Brianna B. Williams et al.
CELL HOST & MICROBE (2014)
Gut Microbiota-Produced Succinate Promotes C-difficile Infection after Antibiotic Treatment or Motility Disturbance
Jessica A. Ferreyra et al.
CELL HOST & MICROBE (2014)
The Treatment-Naive Microbiome in New-Onset Crohn's Disease
Dirk Gevers et al.
CELL HOST & MICROBE (2014)
Genetic Variants Synthesize to Produce Paneth Cell Phenotypes That Define Subtypes of Crohn's Disease
Kelli L. VanDussen et al.
GASTROENTEROLOGY (2014)
The Intestinal Metabolome: An Intersection Between Microbiota and Host
Luke K. Ursell et al.
GASTROENTEROLOGY (2014)
Diet and the Intestinal Microbiome: Associations, Functions, and Implications for Health and Disease
Lindsey G. Albenberg et al.
GASTROENTEROLOGY (2014)
Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section
Hedvig E. Jakobsson et al.
GUT (2014)
Diet, Metabolites, and Western-Lifestyle Inflammatory Diseases
Alison N. Thorburn et al.
IMMUNITY (2014)
Symbiotic Bacterial Metabolites Regulate Gastrointestinal Barrier Function via the Xenobiotic Sensor PXR and Toll-like Receptor 4
Madhukumar Venkatesh et al.
IMMUNITY (2014)
Gut microbiota-generated metabolites in animal health and disease
Won-Jae Lee et al.
NATURE CHEMICAL BIOLOGY (2014)
Relating the metatranscriptome and metagenome of the human gut
Eric A. Franzosa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders
Elaine Y. Hsiao et al.
CELL (2013)
Short-Chain Fatty Acids Activate GPR41 and GPR43 on Intestinal Epithelial Cells to Promote Inflammatory Responses in Mice
Myung H. Kim et al.
GASTROENTEROLOGY (2013)
A Prospective Study of Long-term Intake of Dietary Fiber and Risk of Crohn's Disease and Ulcerative Colitis
Ashwin N. Ananthakrishnan et al.
GASTROENTEROLOGY (2013)
Tryptophan Catabolites from Microbiota Engage Aryl Hydrocarbon Receptor and Balance Mucosal Reactivity via Interleukin-22
Teresa Zelante et al.
IMMUNITY (2013)
Richness of human gut microbiome correlates with metabolic markers
Emmanuelle Le Chatelier et al.
NATURE (2013)
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
Yukihiro Furusawa et al.
NATURE (2013)
Paneth cells as a site of origin for intestinal inflammation
Timon E. Adolph et al.
NATURE (2013)
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
Koji Atarashi et al.
NATURE (2013)
Gut metagenome in European women with normal, impaired and diabetic glucose control
Fredrik H. Karlsson et al.
NATURE (2013)
Succinate is an inflammatory signal that induces IL-1β through HIF-1α
G. M. Tannahill et al.
NATURE (2013)
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
Robert A. Koeth et al.
NATURE MEDICINE (2013)
Intestinal Microbial Metabolism of Phosphatidylcholine and Cardiovascular Risk
W. H. Wilson Tang et al.
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Host-Derived Nitrate Boosts Growth of E. coli in the Inflamed Gut
Sebastian E. Winter et al.
SCIENCE (2013)
The Role of Klebsiella in Crohn's Disease with a Potential for the Use of Antimicrobial Measures
Taha Rashid et al.
INTERNATIONAL JOURNAL OF RHEUMATOLOGY (2013)
Determinants of colonic barrier function in inflammatory bowel disease and potential therapeutics
Nina A. Hering et al.
JOURNAL OF PHYSIOLOGY-LONDON (2012)
Tissue factor and PAR1 promote microbiota-induced intestinal vascular remodelling
Christoph Reinhardt et al.
NATURE (2012)
Goblet cells deliver luminal antigen to CD103+ dendritic cells in the small intestine
Jeremiah R. McDole et al.
NATURE (2012)
A metagenome-wide association study of gut microbiota in type 2 diabetes
Junjie Qin et al.
NATURE (2012)
Antibiotics in early life alter the murine colonic microbiome and adiposity
Ilseung Cho et al.
NATURE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity
Jorge Henao-Mejia et al.
NATURE (2012)
Antibiotic Exposure and IBD Development Among Children: A Population-Based Cohort Study
Matthew P. Kronman et al.
PEDIATRICS (2012)
Microbial Exposure During Early Life Has Persistent Effects on Natural Killer T Cell Function
Torsten Olszak et al.
SCIENCE (2012)
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Xochitl C. Morgan et al.
GENOME BIOLOGY (2012)
NLRP6 Inflammasome Regulates Colonic Microbial Ecology and Risk for Colitis
Eran Elinav et al.
CELL (2011)
Eating For Two: How Metabolism Establishes lnterspecies Interactions in the Gut
Michael A. Fischbach et al.
CELL HOST & MICROBE (2011)
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
Zeneng Wang et al.
NATURE (2011)
Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species
Koji Atarashi et al.
SCIENCE (2011)
Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine
Ken Cadwell et al.
CELL (2010)
Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis
Wendy S. Garrett et al.
CELL HOST & MICROBE (2010)
Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease
Dermot P. B. McGovern et al.
HUMAN MOLECULAR GENETICS (2010)
Enteric defensins are essential regulators of intestinal microbial ecology
Nita H. Salzman et al.
NATURE IMMUNOLOGY (2010)
Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota
June L. Round et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
Maria G. Dominguez-Bello et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Environmental risk factors in inflammatory bowel diseases. Investigating the hygiene hypothesis: A Spanish case-control study
Pilar Lopez-Serrano et al.
SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY (2010)
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivaylo I. Ivanov et al.
CELL (2009)
The Key Role of Segmented Filamentous Bacteria in the Coordinated Maturation of Gut Helper T Cell Responses
Valerie Gaboriau-Routhiau et al.
IMMUNITY (2009)
Crohn's disease adherent-invasive Escherichia coli colonize and induce strong gut inflammation in transgenic mice expressing human CEACAM
Frederic A. Carvalho et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2009)
A core gut microbiome in obese and lean twins
Peter J. Turnbaugh et al.
NATURE (2009)
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
William R. Wikoff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Analysis of bacterial bowel communities of IBD patients: What has it revealed?
Harry Sokol et al.
INFLAMMATORY BOWEL DISEASES (2008)
Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system
Wendy S. Garrett et al.
CELL (2007)
New serological markers in inflammatory bowel disease are associated with complicated disease behaviour
Marc Ferrante et al.
GUT (2007)
Meta-analysis: enteral nutrition in active Crohn's disease in children
P. Dziechciarz et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2007)
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
Daniel N. Frank et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Unravelling the pathogenesis of inflammatory bowel disease
R. J. Xavier et al.
NATURE (2007)
High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease
Roman Kotlowski et al.
GUT (2007)
Review article: biological activity markers in inflammatory bowel disease
D. Desai et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2007)
Allergies, infections and the hygiene hypothesis - The epidemiological evidence
Erika von Mutius
IMMUNOBIOLOGY (2007)
Gut-associated bacterial microbiota in paediatric patients with inflammatory bowel disease
M. P. Conte et al.
GUT (2006)
Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease
Pauline D. Scanlan et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2006)
Inerences between tissue-associated intestinal microfloras of patients with Crohn's disease and ulcerative colitis
Uri Gophna et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2006)
Antibodies against laminaribioside and chitobioside are novel serologic markers in Crohn's disease
Iris Dotan et al.
GASTROENTEROLOGY (2006)
Muc2-deficient mice spontaneously develop colitis, indicating that Muc2 is critical for colonic protection
Maria Van der Sluis et al.
GASTROENTEROLOGY (2006)
Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease
A Swidsinski et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Molecular characterization of rectal mucosa-associated bacterial flora in inflammatory bowel disease
M Mylonaki et al.
INFLAMMATORY BOWEL DISEASES (2005)
Butyrate specifically modulates MUC gene expression in intestinal epithelial goblet cells deprived of glucose
E Gaudier et al.
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2004)
Ribosomal DNA sequence analysis of mucosa-associated bacteria in Crohn's disease
T Prindiville et al.
INFLAMMATORY BOWEL DISEASES (2004)
Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
SJ Ott et al.
GUT (2004)
Inflammatory bowel disease
DK Podolsky
NEW ENGLAND JOURNAL OF MEDICINE (2002)
Mucosal flora in inflammatory bowel disease
A Swidsinski et al.
GASTROENTEROLOGY (2002)