Journal
MOLECULAR BIOLOGY OF THE CELL
Volume 30, Issue 12, Pages 1451-1462Publisher
AMER SOC CELL BIOLOGY
DOI: 10.1091/mbc.E18-10-0641
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- National Science Foundation [MCB-1615938]
- National Institutes of Health [T32 GM008297]
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Microtubules are cylindrical polymers of alpha beta-tubulin that play critical roles in fundamental processes such as chromosome segregation and vesicular transport. Microtubules display dynamic instability, switching stochastically between growth and rapid shrinking as a consequence of GTPase activity in the lattice. The molecular mechanisms behind microtubule catastrophe, the switch from growth to rapid shrinking, remain poorly defined. Indeed, two-state stochastic models that seek to describe microtubule dynamics purely in terms of the biochemical properties of GTP- and GDP-bound alpha beta-tubulin predict the concentration dependence of microtubule catastrophe incorrectly. Recent studies provide evidence for three distinct conformations of alpha beta-tubulin in the lattice that likely correspond to GTP, GDP.P-i, and GDP. The incommensurate lattices observed for these different conformations raise the possibility that in a mixed nucleotide state lattice, neighboring tubulin dimers might modulate each other's conformations and hence each other's biochemistry. We explored whether incorporating a GDP.P-i state or the likely effects of conformational accommodation can improve predictions of catastrophe. Adding a GDP.P-i intermediate did not improve the model. In contrast, adding neighbor-dependent modulation of tubulin biochemistry improved predictions of catastrophe. Because this conformational accommodation should propagate beyond nearest-neighbor contacts, our modeling suggests that long-range, through-lattice effects are important determinants of microtubule catastrophe.
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