Related references
Note: Only part of the references are listed.Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
Joseph A. Edwards et al.
PLOS BIOLOGY (2018)
Rhizobia promote the growth of rice shoots by targeting cell signaling, division and expansion
Qingqing Wu et al.
PLANT MOLECULAR BIOLOGY (2018)
Phenotypic and genomic characterization of the antimicrobial producer Rheinheimera sp EpRS3 isolated from the medicinal plant Echinacea purpurea: insights into its biotechnological relevance
Luana Presta et al.
RESEARCH IN MICROBIOLOGY (2017)
The Wheat Microbiome Under Four Management Strategies, and Potential for Endophytes in Disease Protection
Kristi Gdanetz et al.
PHYTOBIOMES JOURNAL (2017)
Rice bacterial endophytes: isolation of a collection, identification of beneficial strains and microbiome analysis
Iris Bertani et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)
Structure, variation, and assembly of the root-associated microbiomes of rice
Joseph Edwards et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Use of CMEIAS Image Analysis Software to Accurately Compute Attributes of Cell Size, Morphology, Spatial Aggregation and Color Segmentation that Signify in Situ Ecophysiological Adaptations in Microbial Biofilm Communities
Frank B. Dazzo et al.
COMPUTATION (2015)
Illumina-based analysis of endophytic bacterial diversity and space-time dynamics in sugar beet on the north slope of Tianshan mountain
YingWu Shi et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)
A comparative analysis of endophytic bacterial communities associated with hyperaccumulators growing in mine soils
Liang Chen et al.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2014)
Bacterial community variations in an alfalfa- rice rotation system revealed by 16S rRNA gene 454-pyrosequencing
Ana R. Lopes et al.
FEMS MICROBIOLOGY ECOLOGY (2014)
Detection and quantification of native microbial populations on soil-grown rice roots by catalyzed reporter deposition-fluorescence in situ hybridization
Hannes Schmidt et al.
FEMS MICROBIOLOGY ECOLOGY (2014)
Rheinheimera hassiensis sp nov and Rheinheimera muenzenbergensis sp nov., two species from the rhizosphere of Hordeum secalinum
Christian Suarez et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Low Nitrogen Fertilization Adapts Rice Root Microbiome to Low Nutrient Environment by Changing Biogeochemical Functions
Seishi Ikeda et al.
MICROBES AND ENVIRONMENTS (2014)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole et al.
NUCLEIC ACIDS RESEARCH (2014)
Colonization of plants by human pathogenic bacteria in the course of organic vegetable production
Andreas Hofmann et al.
FRONTIERS IN MICROBIOLOGY (2014)
Effects of Plant Genotype and Nitrogen Level on Bacterial Communities in Rice Shoots and Roots
Kazuhiro Sasaki et al.
MICROBES AND ENVIRONMENTS (2013)
Long-Term Rice and Green Manure Rotation Alters the Endophytic Bacterial Communities of the Rice Root
Xiao-Xia Zhang et al.
MICROBIAL ECOLOGY (2013)
Culturing captures members of the soil rare biosphere
Ashley Shade et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis
A. Sessitsch et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2012)
Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages
Pablo R. Hardoim et al.
PLOS ONE (2012)
Diversity and Activity of Free-Living Nitrogen-Fixing Bacteria and Total Bacteria in Organic and Conventionally Managed Soils
Caroline H. Orr et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
Woo Jun Sul et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Investigating antimicrobial activity in Rheinheimera sp due to hydrogen peroxide generated by L-lysine oxidase activity
Wen Ming Chen et al.
ENZYME AND MICROBIAL TECHNOLOGY (2010)
Enhancement of rice production using endophytic strains of Rhizobium leguminosarum bv. trifolii in extensive field inoculation trials within the Egypt Nile delta
Youssef G. Yanni et al.
PLANT AND SOIL (2010)
Proteomic analysis of rice seedlings infected by Sinorhizobium meliloti 1021
Feng Chi et al.
PROTEOMICS (2010)
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki et al.
BIOINFORMATICS (2009)
Transcriptional activity of paddy soil bacterial communities
Pravin Malla Shrestha et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Isolation, partial identification and application of diazotrophic rhizobacteria from traditional Indian rice cultivars
Bhavanath Jha et al.
EUROPEAN JOURNAL OF SOIL BIOLOGY (2009)
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
J. R. Cole et al.
NUCLEIC ACIDS RESEARCH (2009)
Coexistence of predominantly nonculturable rhizobia with diverse, endophytic bacterial taxa within nodules of wild legumes
Rosella Muresu et al.
FEMS MICROBIOLOGY ECOLOGY (2008)
Rheinheimera tangshanensis sp nov., a rice root-associated bacterium
Xiaoxia Zhang et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2008)
Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis
Lei Sun et al.
MICROBIAL ECOLOGY (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Ascending migration of endophytic rhizobia, from roots to leaves, inside rice plants and assessment of benefits to rice growth physiology
F Chi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
In situ stable isotope probing of methanogenic archaea in the rice rhizosphere
YH Lu et al.
SCIENCE (2005)
Regulation of enteric endophytic bacterial colonization by plant defenses
AL Iniguez et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2005)
Endophytic rhizobia in barley, wheat and canola roots
NZ Lupwayi et al.
CANADIAN JOURNAL OF PLANT SCIENCE (2004)
Quantitative assessments of the host range and strain specificity of endophytic colonization by Klebsiella pneumoniae 342
YM Dong et al.
PLANT AND SOIL (2003)
Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of rice
XY Tan et al.
ENVIRONMENTAL MICROBIOLOGY (2003)
Endophytic nitrogen fixation in sugarcane: present knowledge and future applications
RM Boddey et al.
PLANT AND SOIL (2003)
Endophytic colonization of plant roots by nitrogen-fixing bacteria
EC Cocking
PLANT AND SOIL (2003)
Natural endophytic association between Rhizobium etli and maize (Zea mays L.)
ML Gutiérrez-Zamora et al.
JOURNAL OF BIOTECHNOLOGY (2001)
The beneficial plant growth-promoting association of Rhizobium leguminosarum bv. trifolii with rice roots
YG Yanni et al.
AUSTRALIAN JOURNAL OF PLANT PHYSIOLOGY (2001)
Rhizobial inoculation influences seedling vigor and yield of rice
JC Biswas et al.
AGRONOMY JOURNAL (2000)
Rhizobia inoculation improves nutrient uptake and growth of lowland rice
JC Biswas et al.
SOIL SCIENCE SOCIETY OF AMERICA JOURNAL (2000)
Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose
AS Fernandez et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose
SA Hashsham et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
Reassessment of the taxonomic structure of the diazotrophic genus Azoarcus sensu lato and description of three new genera and new species, Azovibrio restrictus gen. nov., sp nov., Azospira oryzae gen. nov., sp nov and Azonexus fungiphilus gen. nov., sp nov.
B Reinhold-Hurek et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)
Nitrogen fixation in endophytic and associative symbiosis
EK James
FIELD CROPS RESEARCH (2000)
Share Paper
