Related references
Note: Only part of the references are listed.A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation
Maojun Wang et al.
NEW PHYTOLOGIST (2018)
Next-generation Sequencing Sheds New Light on Small RNAs in Plant Reproductive Development
Xiaobai Li
CURRENT ISSUES IN MOLECULAR BIOLOGY (2018)
Whole genome re-sequencing reveals evolutionary patterns of sacred lotus (Nelumbo nucifera)
Longyu Huang et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2018)
The evolution of posttranscriptional regulation
Bernhard Schaefke et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2018)
Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.)
Panrong Ren et al.
FRONTIERS IN PLANT SCIENCE (2018)
Gene Duplication and Transference of Function in the paleoAP3 Lineage of Floral Organ Identity Genes
Kelsey D. Galimba et al.
FRONTIERS IN PLANT SCIENCE (2018)
Identification and Characterization of the MADS-Box Genes and Their Contribution to Flower Organ in Carnation (Dianthus caryophyllus L.)
Xiaoni Zhang et al.
GENES (2018)
Transcriptomic analysis identifies the key genes involved in stamen petaloid in lotus (Nelumbo nucifera)
Zhongyuan Lin et al.
BMC GENOMICS (2018)
Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development
Juanjuan Li et al.
PLANT GROWTH REGULATION (2018)
SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions
Juan L. Trincado et al.
GENOME BIOLOGY (2018)
Genome re-annotation of the wild strawberry Fragaria vesca using extensive Illumina- and SMRT-based RNA-seq datasets
Yongping Li et al.
DNA RESEARCH (2018)
PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq
Yubang Gao et al.
BIOINFORMATICS (2018)
TACO produces robust multisample transcriptome assemblies from RNA-seq
Yashar S. Niknafs et al.
NATURE METHODS (2017)
Tissue-specific expression of telomerase reverse transcriptase gene variants in Nicotiana tabacum
Jana Fiserova Jureckova et al.
PLANTA (2017)
The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses
Feng Wu et al.
PLANT JOURNAL (2017)
The evolution of plant microRNAs: insights from a basal eudicot sacred lotus
Tao Shi et al.
PLANT JOURNAL (2017)
Global identification of alternative splicing via comparative analysis of SMRT- and Illumina-based RNA-seq in strawberry
Yongping Li et al.
PLANT JOURNAL (2017)
Identification and analysis of glutathione S-transferase gene family in sweet potato reveal divergent GST-mediated networks in aboveground and underground tissues in response to abiotic stresses
Na Ding et al.
BMC PLANT BIOLOGY (2017)
Expression of B-class MADS-box genes in response to variations in photoperiod is associated with chasmogamous and cleistogamous flower development in Viola philippica
Qiaoxia Li et al.
BMC PLANT BIOLOGY (2016)
Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in Disease Resistance
Liu Duan et al.
PLANT PHYSIOLOGY (2016)
A survey of the sorghum transcriptome using single-molecule long reads
Salah E. Abdel-Ghany et al.
NATURE COMMUNICATIONS (2016)
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
Bo Wang et al.
NATURE COMMUNICATIONS (2016)
Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues of Salvia miltiorrhiza and tanshinone biosynthesis
Zhichao Xu et al.
PLANT JOURNAL (2015)
RNA-Seq Uncovers SNPs and Alternative Splicing Events in Asian Lotus (Nelumbo nucifera)
Mei Yang et al.
PLOS ONE (2015)
LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
Kun Wang et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2015)
Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR
April D. Estrada et al.
PEERJ (2015)
Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes
MeiYee Law et al.
PLANT PHYSIOLOGY (2015)
Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
Sean P. Gordon et al.
PLOS ONE (2015)
Bombyx E75 isoforms display stage- and tissue-specific responses to 20-hydroxyecdysone
Kang Li et al.
SCIENTIFIC REPORTS (2015)
Exploiting single-molecule transcript sequencing for eukaryotic gene prediction
Andre E. Minoche et al.
GENOME BIOLOGY (2015)
LoRDEC: accurate and efficient long read error correction
Leena Salmela et al.
BIOINFORMATICS (2014)
Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation
Shawn R. Thatcher et al.
PLANT CELL (2014)
Global Dissection of Alternative Splicing in Paleopolyploid Soybean
Yanting Shen et al.
PLANT CELL (2014)
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
Shihao Shen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
Peng Cui et al.
GENOME BIOLOGY (2014)
A single-molecule long-read survey of the human transcriptome
Donald Sharon et al.
NATURE BIOTECHNOLOGY (2013)
Assessment of transcript reconstruction methods for RNA-seq
Tamara Steijger et al.
NATURE METHODS (2013)
A Major Facilitator Superfamily Transporter Plays a Dual Role in Polar Auxin Transport and Drought Stress Tolerance in Arabidopsis
Estelle Remy et al.
PLANT CELL (2013)
Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses
Dorothee Staiger et al.
PLANT CELL (2013)
Complexity of the Alternative Splicing Landscape in Plants
Anireddy S. N. Reddy et al.
PLANT CELL (2013)
The sacred lotus genome provides insights into the evolution of flowering plants
Yun Wang et al.
PLANT JOURNAL (2013)
Genome-Wide Detection of Condition-Sensitive Alternative Splicing in Arabidopsis Roots
Wenfeng Li et al.
PLANT PHYSIOLOGY (2013)
Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions
Pil Joon Seo et al.
PLANTA (2013)
Characterization of the human ESC transcriptome by hybrid sequencing
Kin Fai Au et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
Ray Ming et al.
GENOME BIOLOGY (2013)
Thermal-Stable Proteins of Fruit of Long-Living Sacred Lotus Nelumbo nucifera Gaertn var. China Antique
J. Shen-Miller et al.
TROPICAL PLANT BIOLOGY (2013)
Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes
Sergei A. Filichkin et al.
BIOLOGY DIRECT (2012)
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
Yamile Marquez et al.
GENOME RESEARCH (2012)
Polypyrimidine Tract Binding Protein Homologs from Arabidopsis Are Key Regulators of Alternative Splicing with Implications in Fundamental Developmental Processes
Christina Ruehl et al.
PLANT CELL (2012)
Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation
Verena Kriechbaumer et al.
PLANT JOURNAL (2012)
Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse
Yevgenia L. Khodor et al.
RNA (2012)
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
Chen Xie et al.
NUCLEIC ACIDS RESEARCH (2011)
Maize Rough Endosperm3 Encodes an RNA Splicing Factor Required for Endosperm Cell Differentiation and Has a Nonautonomous Effect on Embryo Development
Romain Fouquet et al.
PLANT CELL (2011)
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
Guojie Zhang et al.
GENOME RESEARCH (2010)
Alternative splicing and evolution: diversification, exon definition and function
Hadas Keren et al.
NATURE REVIEWS GENETICS (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Qun Pan et al.
NATURE GENETICS (2008)
Annotating genomes with massive-scale RNA sequencing
France Denoeud et al.
GENOME BIOLOGY (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Regulation of alternative splicing of Bcl-x by IL-6, GM-CSF and TPA
CY Li et al.
CELL RESEARCH (2004)
The KEGG resource for deciphering the genome
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2004)
Share Paper
