Related references
Note: Only part of the references are listed.Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry
Rachel Shahan et al.
PLANT PHYSIOLOGY (2018)
Genome re-annotation of the wild strawberry Fragaria vesca using extensive Illumina- and SMRT-based RNA-seq datasets
Yongping Li et al.
DNA RESEARCH (2018)
Global identification of alternative splicing via comparative analysis of SMRT- and Illumina-based RNA-seq in strawberry
Yongping Li et al.
PLANT JOURNAL (2017)
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
Chia-Yi Cheng et al.
PLANT JOURNAL (2017)
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
Patrick P. Edger et al.
GIGASCIENCE (2017)
An eFP browser for visualizing strawberry fruit and flower transcriptomes
Charles Hawkins et al.
HORTICULTURE RESEARCH (2017)
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
Yi Zheng et al.
MOLECULAR PLANT (2016)
Reprogramming of Strawberry (Fragaria vesca) Root Transcriptome in Response to Phytophthora cactorum
Anna Toljamo et al.
PLOS ONE (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Re-annotation of the woodland strawberry (Fragaria vesca) genome
Omar Darwish et al.
BMC GENOMICS (2015)
Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
Rui Xia et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
Rui Xia et al.
PLANT PHYSIOLOGY (2015)
FRAGARIA: A GENUS WITH DEEP HISTORICAL ROOTS AND RIPE FOR EVOLUTIONARY AND ECOLOGICAL INSIGHTS
Aaron Liston et al.
AMERICAN JOURNAL OF BOTANY (2014)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps
Jacob A. Tennessen et al.
GENOME BIOLOGY AND EVOLUTION (2014)
AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis
Daniel J. Gibbs et al.
NEW PHYTOLOGIST (2014)
Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks
Courtney A. Hollender et al.
PLANT PHYSIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca
Chunying Kang et al.
PLANT CELL (2013)
Ca2+-dependent GTPase, Extra-large G Protein 2 (XLG2), Promotes Activation of DNA-binding Protein Related to Vernalization 1 (RTV1), Leading to Activation of Floral Integrator Genes and Early Flowering in Arabidopsis
Jae Bok Heo et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Apple miRNAs and tasiRNAs with novel regulatory networks
Rui Xia et al.
GENOME BIOLOGY (2012)
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
Carson Holt et al.
BMC BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
The genome of woodland strawberry (Fragaria vesca)
Vladimir Shulaev et al.
NATURE GENETICS (2011)
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
Charles Addo-Quaye et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Biological basis for restriction of microRNA targets to the 3′ untranslated region in mammalian mRNAs
Shuo Gu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Transposase-derived transcription factors regulate light signaling in Arabidopsis
Rongcheng Lin et al.
SCIENCE (2007)
The MYB transcription factor superfamily of arabidopsis: Expression analysis and phylogenetic comparison with the rice MYB family
YH Chen et al.
PLANT MOLECULAR BIOLOGY (2006)
Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
BIOINFORMATICS (2005)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Gene identification in novel eukaryotic genomes by self-training algorithm
A Lomsadze et al.
NUCLEIC ACIDS RESEARCH (2005)
Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of arabidopsis development
RC Lin et al.
PLANT PHYSIOLOGY (2004)
Micrornas: Small RNAs with a big role in gene regulation
L He et al.
NATURE REVIEWS GENETICS (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
Share Paper
