Related references
Note: Only part of the references are listed.High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress
Colin Chih-Chien Wu et al.
MOLECULAR CELL (2019)
RiboProP: a probabilistic ribosome positioning algorithm for ribosome profiling
Dengke Zhao et al.
BIOINFORMATICS (2019)
Ribonuclease selection for ribosome profiling
Maxim V. Gerashchenko et al.
NUCLEIC ACIDS RESEARCH (2017)
A ribosome profiling study of mRNA cleavage by the endonuclease RelE
Jae-Yeon Hwang et al.
NUCLEIC ACIDS RESEARCH (2017)
eIF5A Functions Globally in Translation Elongation and Termination
Anthony P. Schuller et al.
MOLECULAR CELL (2017)
Translation of poly(A) tails leads to precise mRNA cleavage
Nicholas R. Guydosh et al.
RNA (2017)
Global analysis of translation termination in E. coli
Natalie E. Baggett et al.
PLOS GENETICS (2017)
Regulated Ire1-dependent mRNA decay requires no-go mRNA degradation to maintain endoplasmic reticulum homeostasis in S-pombe
Nicholas R. Guydosh et al.
ELIFE (2017)
Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
David H. Burkhardt et al.
ELIFE (2017)
Discharging tRNAs: a tug of war between translation and detoxification in Escherichia coli
Irem Avcilar-Kucukgoze et al.
NUCLEIC ACIDS RESEARCH (2016)
Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center
James Marks et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing
Yuhei Chadani et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Comparative survey of the relative impact of mRNA features on local ribosome profiling read density
Patrick B. F. O'Connor et al.
NATURE COMMUNICATIONS (2016)
Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation
David E. Weinberg et al.
CELL REPORTS (2016)
Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling
Fuad Mohammad et al.
CELL REPORTS (2016)
A streamlined ribosome profiling protocol for the characterization of microorganisms
Haythem Latif et al.
BIOTECHNIQUES (2015)
Determinants of the Rate of mRNA Translocation in Bacterial Protein Synthesis
Anneli Borg et al.
JOURNAL OF MOLECULAR BIOLOGY (2015)
Structural basis for stop codon recognition in eukaryotes
Alan Brown et al.
NATURE (2015)
Translational tuning optimizes nascent protein folding in cells
Soo Jung Kim et al.
SCIENCE (2015)
High-Precision Analysis of Translational Pausing by Ribosome Profiling in Bacteria Lacking EFP
Christopher J. Woolstenhulme et al.
CELL REPORTS (2015)
Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast
Jeffrey A. Hussmann et al.
PLOS GENETICS (2015)
Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo
Kenji Nakahigashi et al.
BMC GENOMICS (2014)
An Integrated Approach Reveals Regulatory Controls on Bacterial Translation Elongation
Arvind R. Subramaniam et al.
CELL (2014)
Dom34 Rescues Ribosomes in 3′ Untranslated Regions
Nicholas R. Guydosh et al.
CELL (2014)
Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
Gene-Wei Li et al.
CELL (2014)
Poly(A)-tail profiling reveals an embryonic switch in translational control
Alexander O. Subtelny et al.
NATURE (2014)
The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli
Rohan Balakrishnan et al.
NUCLEIC ACIDS RESEARCH (2014)
Translation inhibitors cause abnormalities in ribosome profiling experiments
Maxim V. Gerashchenko et al.
NUCLEIC ACIDS RESEARCH (2014)
Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria
Rembrandt J. F. Haft et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
Liana F. Lareau et al.
ELIFE (2014)
Arrest Peptides: Cis-Acting Modulators of Translation
Koreaki Ito et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 82 (2013)
Tools for Characterizing Bacterial Protein Synthesis Inhibitors
Cedric Orelle et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2013)
rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments
Patrick B. F. O'Connor et al.
BIOINFORMATICS (2013)
elF5A Promotes Translation of Polyproline Motifs
Erik Gutierrez et al.
MOLECULAR CELL (2013)
Non-optimal codon usage affects expression, structure and function of clock protein FRQ
Mian Zhou et al.
NATURE (2013)
Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes
Annemarie H. Becker et al.
NATURE PROTOCOLS (2013)
Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P
Lauri Peil et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
High-resolution view of bacteriophage lambda gene expression by ribosome profiling
Xiaoqiu Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Nascent peptides that block protein synthesis in bacteria
Christopher J. Woolstenhulme et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
EF-P Is Essential for Rapid Synthesis of Proteins Containing Consecutive Proline Residues
Lili K. Doerfel et al.
SCIENCE (2013)
Translation Elongation Factor EF-P Alleviates Ribosome Stalling at Polyproline Stretches
Susanne Ude et al.
SCIENCE (2013)
Positively Charged Residues Are the Major Determinants of Ribosomal Velocity
Catherine A. Charneski et al.
PLOS BIOLOGY (2013)
A serine sensor for multicellularity in a bacterium
Arvind R. Subramaniam et al.
ELIFE (2013)
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
Gene-Wei Li et al.
NATURE (2012)
Balanced Codon Usage Optimizes Eukaryotic Translational Efficiency
Wenfeng Qian et al.
PLOS GENETICS (2012)
Selective Ribosome Profiling Reveals the Cotranslational Chaperone Action of Trigger Factor In Vivo
Eugene Oh et al.
CELL (2011)
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
Nicholas T. Ingolia et al.
CELL (2011)
Synonymous but not the same: the causes and consequences of codon bias
Joshua B. Plotkin et al.
NATURE REVIEWS GENETICS (2011)
Specific inhibition of bacterial RNase T2 by helix 41 of 16S ribosomal RNA
Kei Kitahara et al.
NATURE COMMUNICATIONS (2011)
Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action
Jack A. Dunkle et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Characterizing Escherichia coli DH5α Growth and Metabolism in a Complex Medium Using Genome-Scale Flux Analysis
Suresh Selvarasu et al.
BIOTECHNOLOGY AND BIOENGINEERING (2009)
Genetic Identification of Nascent Peptides That Induce Ribosome Stalling
Douglas R. Tanner et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Slow peptide bond formation by proline and other N-alkylamino acids in translation
Michael Y. Pavlov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
Nicholas T. Ingolia et al.
SCIENCE (2009)
A pause for thought along the co-translational folding pathway
Anton A. Komar
TRENDS IN BIOCHEMICAL SCIENCES (2009)
Modulation of the Rate of Peptidyl Transfer on the Ribosome by the Nature of Substrates
Ingo Wohlgemuth et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Deficiency in L-serine deaminase results in abnormal growth and cell division of Escherichia coli K-12
Xiao Zhang et al.
MOLECULAR MICROBIOLOGY (2008)
A silent polymorphism in the MDR1 gene changes substrate specificity
Chava Kimchi-Sarfaty et al.
SCIENCE (2007)
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
MK Doma et al.
NATURE (2006)
Solving the riddle of codon usage preferences: a test for translational selection
M dos Reis et al.
NUCLEIC ACIDS RESEARCH (2004)
The bacterial toxin RelE displays codon-specific cleavage of rnRNAs in the ribosomal A site
K Pedersen et al.
CELL (2003)
The ribosomal exit tunnel functions as a discriminating gate
H Nakatogawa et al.
CELL (2002)
Share Paper
