Related references
Note: Only part of the references are listed.Survival of the fewest: Microbial dormancy and maintenance in marine sediments through deep time
James A. Bradley et al.
GEOBIOLOGY (2019)
Predicted microbial secretomes and their target substrates in marine sediment
William D. Orsi et al.
NATURE MICROBIOLOGY (2018)
Multiple stable states in microbial communities explained by the stable marriage problem
Akshit Goyal et al.
ISME JOURNAL (2018)
Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition
Ian P. G. Marshall et al.
MARINE GENOMICS (2018)
Ecology and evolution of seafloor and subseafloor microbial communities
William D. Orsi
NATURE REVIEWS MICROBIOLOGY (2018)
Necromass as a Limited Source of Energy for Microorganisms in Marine Sediments
James A. Bradley et al.
JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2018)
Microbial community assembly and evolution in subseafloor sediment
Piotr Starnawski et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Thriving or surviving? Evaluating active microbial guilds in Baltic Sea sediment
Laura A. Zinke et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2017)
Drivers of Bacterial Maintenance and Minimal Energy Requirements
Christopher P. Kempes et al.
FRONTIERS IN MICROBIOLOGY (2017)
Microbial turnover times in the deep seabed studied by amino acid racemization modelling
Stefan Braun et al.
SCIENTIFIC REPORTS (2017)
Interlaboratory quantification of Bacteria and Archaea in deeply buried sediments of the Baltic Sea (IODP Expedition 347)
Joy Buongiorno et al.
FEMS MICROBIOLOGY ECOLOGY (2017)
Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics
Masaru K. Nobu et al.
ISME JOURNAL (2016)
Slow Microbial Life in the Seabed
Bo Barker Jorgensen et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 8 (2016)
The world of protein acetylation
Adrian Drazic et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2016)
Structural basis for amino acid export by DMT superfamily transporter YddG
Hirotoshi Tsuchiya et al.
NATURE (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Origin, dynamics, and implications of extracellular DNA pools in marine sediments
Andrea Torti et al.
MARINE GENOMICS (2015)
Microbial species delineation using whole genome sequences
Neha J. Varghese et al.
NUCLEIC ACIDS RESEARCH (2015)
Abundant Atribacteria in deep marine sediment from the Adelie Basin, Antarctica
Stephanie A. Carr et al.
FRONTIERS IN MICROBIOLOGY (2015)
Power limits for microbial life
Douglas E. LaRowe et al.
FRONTIERS IN MICROBIOLOGY (2015)
Anvi'o: an advanced analysis and visualization platformfor 'omics data
A. Murat Eren et al.
PEERJ (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
Susannah J. Salter et al.
BMC BIOLOGY (2014)
ARTD1 (PARP1) activation and NAD(+) in DNA repair and cell death
Elise Fouquerel et al.
DNA REPAIR (2014)
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
Kelly C. Wrighton et al.
ISME JOURNAL (2014)
Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics
Christian Rinke et al.
NATURE PROTOCOLS (2014)
Amino Acid Starvation Has Opposite Effects on Mitochondrial and Cytosolic Protein Synthesis
Mark A. Johnson et al.
PLOS ONE (2014)
Energy conservation by oxidation of formate to carbon dioxide and hydrogen via a sodium ion current in a hyperthermophilic archaeon
Jae Kyu Lim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
EVOLUTION Energy at life's origin
William F. Martin et al.
SCIENCE (2014)
Adaptations of anaerobic archaea to life under extreme energy limitation
Florian Mayer et al.
FEMS MICROBIOLOGY REVIEWS (2014)
Quantifying the degradation of organic matter in marine sediments: A review and synthesis
Sandra Arndt et al.
EARTH-SCIENCE REVIEWS (2013)
Microbial community analysis of deeply buried marine sediments of the New Jersey shallow shelf (IODP Expedition 313)
Anja Breuker et al.
FEMS MICROBIOLOGY ECOLOGY (2013)
Identification and Characterization of Re-Citrate Synthase in Syntrophus aciditrophicus
Marie Kim et al.
JOURNAL OF BACTERIOLOGY (2013)
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke et al.
NATURE (2013)
Gene expression in the deep biosphere
William D. Orsi et al.
NATURE (2013)
Predominant archaea in marine sediments degrade detrital proteins
Karen G. Lloyd et al.
NATURE (2013)
Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity
Alisha G. Campbell et al.
PLOS ONE (2013)
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
Jeremy A. Dodsworth et al.
NATURE COMMUNICATIONS (2013)
High-throughput Fluorometric Measurement of Potential Soil Extracellular Enzyme Activities
Colin W. Bell et al.
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
A cross-platform toolkit for mass spectrometry and proteomics
Matthew C. Chambers et al.
NATURE BIOTECHNOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Global distribution of microbial abundance and biomass in subseafloor sediment
Jens Kallmeyer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Anaerobic Respiration Using a Complete Oxidative TCA Cycle Drives Multicellular Swarming in Proteus mirabilis
Christopher J. Alteri et al.
MBIO (2012)
Caloric restriction extends yeast chronological lifespan by altering a pattern of age-related changes in trehalose concentration
Pavlo Kyryakov et al.
FRONTIERS IN PHYSIOLOGY (2012)
Transcriptional Regulation of the Gene Cluster Encoding Allantoinase and Guanine Deaminase in Klebsiella pneumoniae
Karla Guzman et al.
JOURNAL OF BACTERIOLOGY (2011)
Microbial Ecology of the Dark Ocean above, at, and below the Seafloor
Beth N. Orcutt et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
Tripartite ATP-independent periplasmic (TRAP) transporters in bacteria and archaea
Christopher Mulligan et al.
FEMS MICROBIOLOGY REVIEWS (2011)
Metabolomic Analysis and Visualization Engine for LC-MS Data
Eugene Melamud et al.
ANALYTICAL CHEMISTRY (2010)
Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer
Wenyun Lu et al.
ANALYTICAL CHEMISTRY (2010)
Synthesizing and Salvaging NAD+: Lessons Learned from Chlamydomonas reinhardtii
Huawen Lin et al.
PLOS GENETICS (2010)
Complete Ion-Coordination Structure in the Rotor Ring of Na+-Dependent F-ATP Synthases
Thomas Meier et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Lysine Acetylation Is a Highly Abundant and Evolutionarily Conserved Modification in Escherichia Coli
Junmei Zhang et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
Jennifer F. Biddle et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Uncultured archaea in deep marine subsurface sediments: have we caught them all?
Andreas Teske et al.
ISME JOURNAL (2008)
SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Elmar Pruesse et al.
NUCLEIC ACIDS RESEARCH (2007)
Re-citrate synthase from Clostridium kluyveri is phylogenetically related to homocitrate synthase and isopropylmalate synthase rather than to Si-citrate synthase
Fuli Li et al.
JOURNAL OF BACTERIOLOGY (2007)
The natural osmolyte trehalose is a positive regulator of the heat-induced activity of yeast heat shock transcription factor
Laura K. Conlin et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Conservation of the metabolomic response to starvation across two divergent microbes
Matthew J. Brauer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Anaerobic microbial dehalogenation
H Smidt et al.
ANNUAL REVIEW OF MICROBIOLOGY (2004)
Membrane-bound hydrogenase and sulfur reductase of the hyperthermophilic and acidophilic archaeon Acidianus ambivalens
S Laska et al.
MICROBIOLOGY-SGM (2003)