Related references
Note: Only part of the references are listed.TRIM8-driven transcriptomic profile of neural stem cells identified glioma-related nodal genes and pathways
Santina Venuto et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2019)
Lmx1a drives Cux2 expression in the cortical hem through activation of a conserved intronic enhancer
Santiago P. Fregoso et al.
DEVELOPMENT (2019)
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
Rongbin Zheng et al.
NUCLEIC ACIDS RESEARCH (2019)
The Psychiatric Risk Gene Transcription Factor 4 (TCF4) Regulates Neurodevelopmental Pathways Associated With Schizophrenia, Autism, and Intellectual Disability
Marc P. Forrest et al.
SCHIZOPHRENIA BULLETIN (2018)
Detecting and interpreting DNA methylation marks
Ren Ren et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2018)
Building a schizophrenia genetic network: transcription factor 4 regulates genes involved in neuronal development and schizophrenia risk
Hanzhang Xia et al.
HUMAN MOLECULAR GENETICS (2018)
Tcf4 regulates dendritic spine density and morphology in the adult brain
Sophie Crux et al.
PLOS ONE (2018)
Genomic distribution of 5-formylcytosine and 5-carboxylcytosine in human preimplantation embryos
Anna A. Pendina et al.
MOLECULAR REPRODUCTION AND DEVELOPMENT (2018)
MAX is an epigenetic sensor of 5-carboxylcytosine and is altered in multiple myeloma
Dongxue Wang et al.
NUCLEIC ACIDS RESEARCH (2017)
Simultaneous mapping of active DNA demethylation and sister chromatid exchange in single cells
Xiaoji Wu et al.
GENES & DEVELOPMENT (2017)
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin et al.
SCIENCE (2017)
Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes
Judith F. Kribelbauer et al.
CELL REPORTS (2017)
Medulloblastoma and ependymoma cells display increased levels of 5-carboxylcytosine and elevated TET1 expression
Ashley Ramsawhook et al.
CLINICAL EPIGENETICS (2017)
Evidence of CNIH3 involvement in opioid dependence
E. C. Nelson et al.
MOLECULAR PSYCHIATRY (2016)
A Druggable TCF4-and BRD4-Dependent Transcriptional Network Sustains Malignancy in Blastic Plasmacytoid Dendritic Cell Neoplasm
Michele Ceribelli et al.
CANCER CELL (2016)
5-Hydroxymethylcytosine in E-box motifs ACAT|GTG and ACAC|GTG increases DNA-binding of the B-HLH transcription factor TCF4
Syed Khund-Sayeed et al.
INTEGRATIVE BIOLOGY (2016)
Tcf4 Regulates Synaptic Plasticity, DNA Methylation, and Memory Function
Andrew J. Kennedy et al.
CELL REPORTS (2016)
Tet3 Reads 5-Carboxylcytosine through Its CXXC Domain and Is a Potential Guardian against Neurodegeneration
Seung-Gi Jin et al.
CELL REPORTS (2016)
Investigation of the role of TCF4 rare sequence variants in schizophrenia
F. Buket Basmanav et al.
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS (2015)
Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics
Xingyu Lu et al.
CELL RESEARCH (2015)
A Sensitive Approach to Map Genome-wide 5-Hydroxymethylcytosine and 5-Formylcytosine at Single-Base Resolution
Zhiyi Sun et al.
MOLECULAR CELL (2015)
The Phyre2 web portal for protein modeling, prediction and analysis
Lawrence A. Kelley et al.
NATURE PROTOCOLS (2015)
Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals Promoter DNA Methylation Dynamics
Francesco Neri et al.
CELL REPORTS (2015)
Introducing Pitt-Hopkins syndrome-associated mutations of TCF4 to Drosophila daughterless
Laura Tamberg et al.
BIOLOGY OPEN (2015)
Carboxylation of cytosine (5caC) in the CG dinucleotide in the E-box motif (CGCAG|GTG) increases binding of the Tcf3|Ascl1 helix-loop-helix heterodimer 10-fold
Jaya Prakash Golla et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2014)
A survey of rare coding variants in candidate genes in schizophrenia by deep sequencing
X. Hu et al.
MOLECULAR PSYCHIATRY (2014)
Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing
Hao Wu et al.
NATURE BIOTECHNOLOGY (2014)
The emerging roles of TCF4 in disease and development
Marc P. Forrest et al.
TRENDS IN MOLECULAR MEDICINE (2014)
Transient Accumulation of 5-Carboxylcytosine Indicates Involvement of Active Demethylation in Lineage Specification of Neural Stem Cells
Lee M. Wheldon et al.
CELL REPORTS (2014)
Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics
Li Shen et al.
CELL (2013)
Genome-wide Profiling of 5-Formylcytosine Reveals Its Roles in Epigenetic Priming
Chun-Xiao Song et al.
CELL (2013)
Global Epigenomic Reconfiguration During Mammalian Brain Development
Ryan Lister et al.
SCIENCE (2013)
Improved crystallographic models through iterated local density-guided model deformation and reciprocal-space refinement
Thomas C. Terwilliger et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2012)
Towards automated crystallographic structure refinement with phenix.refine
Pavel V. Afonine et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2012)
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development
Yufei Xu et al.
CELL (2012)
Pitt-Hopkins syndrome-associated mutations in TCF4 lead to variable impairment of the transcription factor function ranging from hypomorphic to dominant-negative effects
Mari Sepp et al.
HUMAN MOLECULAR GENETICS (2012)
Functional analysis of TCF4 missense mutations that cause Pitt-Hopkins syndrome
Marc Forrest et al.
HUMAN MUTATION (2012)
Carbon-Oxygen Hydrogen Bonding in Biological Structure and Function
Scott Horowitz et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription
Matthew W. Kellinger et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Crystal Structure of a Complex of DNA with One AT-Hook of HMGA1
Elsa Fonfria-Subiros et al.
PLOS ONE (2012)
Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants
Federico De Masi et al.
NUCLEIC ACIDS RESEARCH (2011)
Functional Diversity of Human Basic Helix-Loop-Helix Transcription Factor TCF4 Isoforms Generated by Alternative 5′ Exon Usage and Splicing
Mari Sepp et al.
PLOS ONE (2011)
Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine
Shinsuke Ito et al.
SCIENCE (2011)
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Cognitive and Sensorimotor Gating Impairments in Transgenic Mice Overexpressing the Schizophrenia Susceptibility Gene Tcf4 in the Brain
Magdalena M. Brzozka et al.
BIOLOGICAL PSYCHIATRY (2010)
Mutational, Functional, and Expression Studies of the TCF4 Gene in Pitt-Hopkins Syndrome
Loic de Pontual et al.
HUMAN MUTATION (2009)
Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
Mamta Tahiliani et al.
SCIENCE (2009)
The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
Skirmantas Kriaucionis et al.
SCIENCE (2009)
Crystal structure of E47 neuroD1/Beta2 bHLH domain DNA complex: Heterodimer selectivity and DNA recognition
Antonella Longo et al.
BIOCHEMISTRY (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Phaser crystallographic software
Airlie J. McCoy et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)
Severe mental retardation with breathing abnormalities (Pitt-Hopkins syndrome) is caused by haploinsufficiency of the neuronal bHLH transcription factor TCF4
Antje Brockschmidt et al.
HUMAN MOLECULAR GENETICS (2007)
Haploinsufficiency of TCF4 causes syndromal mental retardation with intermittent hyperventilation (Pitt-Hopkins syndrome)
Christiane Zweier et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
Mutations in TCF4, encoding a class I basic helix-loop-helix transcription factor, are responsible for Pitt-Hopkins syndrome, a severe epileptic encephalopathy associated with autonomic dysfunction
Jeanne Amiel et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning
JE Padilla et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2003)
Multiparametric scaling of diffraction intensities
Z Otwinowski et al.
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES (2003)
Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms
ME Massari et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Share Paper
