Related references
Note: Only part of the references are listed.Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
Jakob Wirbel et al.
NATURE MEDICINE (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
The oral microbiota in colorectal cancer is distinctive and predictive
Burkhardt Flemer et al.
GUT (2018)
The Human Gut Microbiome: From Association to Modulation
Thomas S. B. Schmidt et al.
CELL (2018)
Bacteroides fragilis Toxin Coordinates a Pro-carcinogenic Inflammatory Cascade via Targeting of Colonic Epithelial Cells
Liam Chung et al.
CELL HOST & MICROBE (2018)
Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria
Christine M. Dejea et al.
SCIENCE (2018)
Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Zhenwei Dai et al.
MICROBIOME (2018)
On the Road to Strain-Resolved Comparative Metagenomics
Nicola Segata
MSYSTEMS (2018)
The Madness of Microbiome: Attempting To Find Consensus Best Practice for 16S Microbiome Studies
Jolinda Pollock et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome
Geoffrey D. Hannigan et al.
MBIO (2018)
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer
Jun Yu et al.
GUT (2017)
Elevated trimethylamine-N-oxide (TMAO) is associated with poor prognosis in primary sclerosing cholangitis patients with normal liver function
Martin Kummen et al.
UNITED EUROPEAN GASTROENTEROLOGY JOURNAL (2017)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
Concordant and discordant familial cancer: Familial risks, proportions and population impact
Christoph Frank et al.
INTERNATIONAL JOURNAL OF CANCER (2017)
Shotgun metagenomics, from sampling to analysis
Christopher Quince et al.
NATURE BIOTECHNOLOGY (2017)
Accessible, curated metagenomic data through ExperimentHub
Edoardo Pasolli et al.
NATURE METHODS (2017)
The gut microbiome in atherosclerotic cardiovascular disease
Zhuye Jie et al.
NATURE COMMUNICATIONS (2017)
Uncovering the trimethylamine-producing bacteria of the human gut microbiota
Silke Rath et al.
MICROBIOME (2017)
Fecal Clostridium symbiosum for Noninvasive Detection of Early and Advanced Colorectal Cancer: Test and Validation Studies
Yuan-Hong Xie et al.
EBIOMEDICINE (2017)
High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia
Julia L. Drewes et al.
NPJ BIOFILMS AND MICROBIOMES (2017)
Trimethylamine N-oxide (TMAO) as a New Potential Therapeutic Target for Insulin Resistance and Cancer
Jens Oellgaard et al.
CURRENT PHARMACEUTICAL DESIGN (2017)
Mobile genes in the human microbiome are structured from global to individual scales
I. L. Brito et al.
NATURE (2016)
The effect of host genetics on the gut microbiome
Marc Jan Bonder et al.
NATURE GENETICS (2016)
Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions
Nielson T. Baxter et al.
GENOME MEDICINE (2016)
Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
Edoardo Pasolli et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling
Andrew M. Thomas et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2016)
Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing
Emily Vogtmann et al.
PLOS ONE (2016)
A genome-wide systems analysis reveals strong link between colorectal cancer and trimethylamine N-oxide (TMAO), a gut microbial metabolite of dietary meat and fat
Rong Xu et al.
BMC GENOMICS (2015)
Structure and Function of CutC Choline Lyase from Human Microbiota Bacterium Klebsiella pneumoniae
Gints Kalnins et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie et al.
NUCLEIC ACIDS RESEARCH (2015)
Gut microbiome development along the colorectal adenoma-carcinoma sequence
Qiang Feng et al.
NATURE COMMUNICATIONS (2015)
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
James Kaminski et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
Francesco Asnicar et al.
PEERJ (2015)
Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012
Jacques Ferlay et al.
INTERNATIONAL JOURNAL OF CANCER (2015)
The Microbiome and Cancer: Is the 'Oncobiome' Mirage Real?
Ryan M. Thomas et al.
TRENDS IN CANCER (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Colorectal cancer statistics, 2014
Rebecca Siegel et al.
CA-A CANCER JOURNAL FOR CLINICIANS (2014)
The Human Gut Microbiome as a Screening Tool for Colorectal Cancer
Joseph P. Zackular et al.
CANCER PREVENTION RESEARCH (2014)
Plasma Choline Metabolites and Colorectal Cancer Risk in the Women's Health Initiative Observational Study
Sajin Bae et al.
CANCER RESEARCH (2014)
The Integrative Human Microbiome Project: Dynamic Analysis of Microbiome-Host Omics Profiles during Periods of Human Health and Disease
Lita M. Proctor
CELL HOST & MICROBE (2014)
Bacterial genotoxin colibactin promotes colon tumour growth by inducing a senescence-associated secretory phenotype
Antony Cougnoux et al.
GUT (2014)
Risk Prediction for Late-Stage Ovarian Cancer by Meta-analysis of 1525 Patient Samples
Markus Riester et al.
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2014)
Potential of fecal microbiota for early-stage detection of colorectal cancer
Georg Zeller et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
H. Bjorn Nielsen et al.
NATURE BIOTECHNOLOGY (2014)
Microorganisms with Claimed Probiotic Properties: An Overview of Recent Literature
Sabina Fijan
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2014)
Meta-analyses of colorectal cancer risk factors
Constance M. Johnson et al.
CANCER CAUSES & CONTROL (2013)
Fusobacterium nucleatum Potentiates Intestinal Tumorigenesis and Modulates the Tumor-Immune Microenvironment
Aleksandar D. Kostic et al.
CELL HOST & MICROBE (2013)
Fusobacterium nucleatum Promotes Colorectal Carcinogenesis by Modulating E-Cadherin/β-Catenin Signaling via its FadA Adhesin
Mara Roxana Rubinstein et al.
CELL HOST & MICROBE (2013)
Human Gut Microbiome and Risk for Colorectal Cancer
Jiyoung Ahn et al.
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Richness of human gut microbiome correlates with metabolic markers
Emmanuelle Le Chatelier et al.
NATURE (2013)
Gut metagenome in European women with normal, impaired and diabetic glucose control
Fredrik H. Karlsson et al.
NATURE (2013)
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
Nicola Segata et al.
NATURE COMMUNICATIONS (2013)
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
Aleksandar D. Kostic et al.
GENOME RESEARCH (2012)
A metagenome-wide association study of gut microbiota in type 2 diabetes
Junjie Qin et al.
NATURE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Clinical Importance of Streptococcus gallolyticus Infection Among Colorectal Cancer Patients: Systematic Review and Meta-analysis
Annemarie Boleij et al.
CLINICAL INFECTIOUS DISEASES (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
The impact of dietary and lifestyle risk factors on risk of colorectal cancer: A quantitative overview of the epidemiological evidence
Rachel R. Huxley et al.
INTERNATIONAL JOURNAL OF CANCER (2009)
A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses
Shaoguang Wu et al.
NATURE MEDICINE (2009)
Molecular Origins of Cancer: Inherited Susceptibility to Common Cancers
William D. Foulkes
NEW ENGLAND JOURNAL OF MEDICINE (2008)
A Lego system for conditional inference
Torsten Hothorn et al.
AMERICAN STATISTICIAN (2006)
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
C Manichanh et al.
GUT (2006)
Polyamines and cancer: Old molecules, new understanding
EW Gerner et al.
NATURE REVIEWS CANCER (2004)
UniProt: the Universal Protein knowledgebase
R Apweiler et al.
NUCLEIC ACIDS RESEARCH (2004)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)