Related references
Note: Only part of the references are listed.Structured DNA Aptamer Interactions with Gold Nanoparticles
Peter A. Mirau et al.
LANGMUIR (2018)
Competition-Enhanced Ligand Selection to Identify DNA Aptamers
Maeling J. N. Tapp et al.
ACS COMBINATORIAL SCIENCE (2018)
RAID v2.0: an updated resource of RNA-associated interactions across organisms
Ying Yi et al.
NUCLEIC ACIDS RESEARCH (2017)
Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15
Shermin Pei et al.
BMC BIOINFORMATICS (2017)
APTANI: a computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data
J. Caroli et al.
BIOINFORMATICS (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
New insights from cluster analysis methods for RNA secondary structure prediction
Emily Rogers et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)
AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments
Phuong Dao et al.
CELL SYSTEMS (2016)
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics
Sebastian Will et al.
BIOINFORMATICS (2015)
Evaluating the dual target binding capabilities of immobilized aptamers using flow cytometry
Adam B. Dunaway et al.
BIOINTERPHASES (2015)
Spectroscopic studies of nucleic acid additions during seed-mediated growth of gold nanoparticles
Maeling J. N. Tapp et al.
JOURNAL OF MATERIALS RESEARCH (2015)
Evaluating the dual target binding capabilities of immobilized aptamers using flow cytometry
Adam B. Dunaway et al.
BIOINTERPHASES (2015)
On the accuracy of statistical procedures in Microsoft Excel 2010
Guy Melard
COMPUTATIONAL STATISTICS (2014)
Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble
Emily Rogers et al.
NUCLEIC ACIDS RESEARCH (2014)
Resonant secondary light emission from plasmonic Au nanostructures at high electron temperatures created by pulsed-laser excitation
Jingyu Huang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Determination of minimal sequence for binding of an aptamer. A comparison of truncation and hybridization inhibition methods
Thao T. Le et al.
RSC ADVANCES (2014)
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package
Carsten Kemena et al.
BIOINFORMATICS (2013)
The Quest for Shape Control: A History of Gold Nanorod Synthesis
Samuel E. Lohse et al.
CHEMISTRY OF MATERIALS (2013)
Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers
Jan Hoinka et al.
BIOINFORMATICS (2012)
Isolation and Optimization of Murine IL-10 Receptor Blocking Oligonucleotide Aptamers Using High-throughput Sequencing
Alexey Berezhnoy et al.
MOLECULAR THERAPY (2012)
CARNA-alignment of RNA structure ensembles
Dragos Alexandru Sorescu et al.
NUCLEIC ACIDS RESEARCH (2012)
Probing High Affinity Sequences of DNA Aptamer against VEGF165
Harleen Kaur et al.
PLOS ONE (2012)
Tuned longitudinal surface plasmon resonance and third-order nonlinear optical properties of gold nanorods
Yushi Tsutsui et al.
NANOTECHNOLOGY (2011)
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
Paolo Di Tommaso et al.
NUCLEIC ACIDS RESEARCH (2011)
Rational Truncation of an RNA Aptamer to Prostate-Specific Membrane Antigen Using Computational Structural Modeling
William M. Rockey et al.
NUCLEIC ACID THERAPEUTICS (2011)
Conservative secondary structure motif of streptavidin-binding aptamers generated by different laboratories
Tao Bing et al.
BIOORGANIC & MEDICINAL CHEMISTRY (2010)
Theophylline detection using an aptamer and DNA-gold nanoparticle conjugates
Jorge L. Chavez et al.
BIOSENSORS & BIOELECTRONICS (2010)
Screening and Improvement of an Anti-VEGF DNA Aptamer
Yoshihiko Nonaka et al.
MOLECULES (2010)
Determining the specificity of protein-DNA interactions
Gary D. Stormo et al.
NATURE REVIEWS GENETICS (2010)
Gold Nanorods: From Synthesis and Properties to Biological and Biomedical Applications
Xiaohuo Huang et al.
ADVANCED MATERIALS (2009)
Functional Nucleic Acid Sensors
Juewen Liu et al.
CHEMICAL REVIEWS (2009)
Plasmon Coupling of Gold Nanorods at Short Distances and in Different Geometries
Alison M. Funston et al.
NANO LETTERS (2009)
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases
Alexandra Shulman-Peleg et al.
NUCLEIC ACIDS RESEARCH (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Label-free plasmonic detection of biomolecular binding by a single gold nanorod
Greg J. Nusz et al.
ANALYTICAL CHEMISTRY (2008)
A fast structural multiple alignment method for long RNA sequences
Yasuo Tabei et al.
BMC BIOINFORMATICS (2008)
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
Eckart Bindewald et al.
NUCLEIC ACIDS RESEARCH (2008)
Multiple alignment by aligning alignments
Travis J. Wheeler et al.
BIOINFORMATICS (2007)
Optimization and modifications of aptamers selected from live cancer cell lines
Dihua Shangguan et al.
CHEMBIOCHEM (2007)
MEME: discovering and analyzing DNA and protein sequence motifs
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2006)
Cancer cell imaging and photothermal therapy in the near-infrared region by using gold nanorods
XH Huang et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)
Pegaptanib, a targeted anti-VEGF aptamer for ocular vascular disease
EWM Ng et al.
NATURE REVIEWS DRUG DISCOVERY (2006)
Predicting a set of minimal free energy RNA secondary structures common to two sequences
DH Mathews
BIOINFORMATICS (2005)
Label-free electronic detection of thrombin in blood serum by using an aptamer-based sensor
Y Xiao et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2005)
Informational complexity and functional activity of RNA structures
JM Carothers et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns
PS Klosterman et al.
NUCLEIC ACIDS RESEARCH (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker
NUCLEIC ACIDS RESEARCH (2003)
Preparation and growth mechanism of gold nanorods (NRs) using seed-mediated growth method
B Nikoobakht et al.
CHEMISTRY OF MATERIALS (2003)
RNA aptamers as reversible antagonists of coagulation factor IXa
CP Rusconi et al.
NATURE (2002)
Dynalign: An algorithm for finding the secondary structure common to two RNA sequences
DH Mathews et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)