Journal
MARINE GENOMICS
Volume 49, Issue -, Pages -Publisher
ELSEVIER
DOI: 10.1016/j.margen.2019.05.004
Keywords
Pseudomonas; Marine bacteria; Arctic; Complete genome; DMSP catabolism
Categories
Funding
- National Natural Science Foundation of China [1476171]
- Key Research Program of Yantai [SM17SK04, SM17SK09]
- Doctoral Science Research Foundation of Yantai University [SM15B01]
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The genus Pseudomonas is highly metabolically diverse and has colonized a wide range of ecological niches. The strain Pseudomonas sp. DMSP-1 was isolated from Arctic seawater (Kongsfjorden, Svalbard) using di-methylsulfoniopropionate (DMSP) as the sole carbon source. To better understand its role in the Arctic coastal ecosystem, the genome of Pseudomonas sp. strain DMSP-1 was completely sequenced. The genome contained a circular chromosome of 6,282,445 bp with an average GC content of 60.01 mol%. A total of 5510 protein coding genes, 70 tRNA genes and 19 rRNA genes were obtained. However, no genes encoding known enzymes associated with DMSP catabolism were identified in the genome, suggesting that novel DMSP degradation genes might exist in Pseudomonas sp. strain DMSP-1.
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