4.7 Article

SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal

Related references

Note: Only part of the references are listed.
Article Biodiversity Conservation

Range expansion as an explanation for introgression in European wildcats

B. Nussberger et al.

BIOLOGICAL CONSERVATION (2018)

Article Evolutionary Biology

Bayesian estimation of partial population continuity using ancient DNA and spatially explicit simulations

Nuno Miguel Silva et al.

EVOLUTIONARY APPLICATIONS (2018)

Article Biochemistry & Molecular Biology

Long-Distance Dispersal Shaped Patterns of Human Genetic Diversity in Eurasia

Isabel Alves et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Review Genetics & Heredity

APPLICATIONS OF NEXT-GENERATION SEQUENCING Reconstructing ancient genomes and epigenomes

Ludovic Orlando et al.

NATURE REVIEWS GENETICS (2015)

Article Biochemistry & Molecular Biology

Comparing Phylogeographic Hypotheses by Simulating DNA Sequences under a Spatially Explicit Model of Coalescence

Simon Dellicour et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients

Miguel Arenas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland

Thomas A. White et al.

MOLECULAR ECOLOGY (2013)

Article Genetics & Heredity

Robust Demographic Inference from Genomic and SNP Data

Laurent Excoffier et al.

PLOS GENETICS (2013)

Article Biochemistry & Molecular Biology

Consequences of Range Contractions and Range Shifts on Molecular Diversity

Miguel Arenas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemical Research Methods

Simulation of Molecular Data under Diverse Evolutionary Scenarios

Miguel Arenas

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Evolutionary Biology

Genome-Wide Heterogeneity of Nucleotide Substitution Model Fit

Leonardo Arbiza et al.

GENOME BIOLOGY AND EVOLUTION (2011)

Article Multidisciplinary Sciences

Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression

Mathias Currat et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Evolutionary Biology

Signals of recent spatial expansions in the grey mouse lemur (Microcebus murinus)

Nicole Schneider et al.

BMC EVOLUTIONARY BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture

Olivier Francois et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Review Biochemistry & Molecular Biology

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

G. Bertorelle et al.

MOLECULAR ECOLOGY (2010)

Article Biochemistry & Molecular Biology

Genetic structure of a recent climate change-driven range extension

Sam C. Banks et al.

MOLECULAR ECOLOGY (2010)

Article Biochemistry & Molecular Biology

A first step towards inferring levels of long-distance dispersal during past expansions

Nicolas Ray et al.

MOLECULAR ECOLOGY RESOURCES (2010)

Article Biochemistry & Molecular Biology

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

Laurent Excoffier et al.

MOLECULAR ECOLOGY RESOURCES (2010)

Review Ecology

Approximate Bayesian Computation (ABC) in practice

Katalin Csillery et al.

TRENDS IN ECOLOGY & EVOLUTION (2010)

Article Biochemistry & Molecular Biology

Spatial Inference of Admixture Proportions and Secondary Contact Zones

Eric Durand et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemical Research Methods

Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments

Oscar Westesson et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Genetics & Heredity

Demographic history of European populations of Arabidopsis thaliana

Olivier Francois et al.

PLOS GENETICS (2008)

Article Biochemistry & Molecular Biology

The fate of mutations surfing on the wave of a range expansion

S Klopfstein et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Biology

The effect of the Neolithic expansion on European molecular diversity

M Currat et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2005)

Article Evolutionary Biology

The importance of proper model assumption in Bayesian phylogenetics

AR Lemmon et al.

SYSTEMATIC BIOLOGY (2004)

Article Biochemistry & Molecular Biology

SPLATCHE: a program to simulate genetic diversity taking into account environmental heterogeneity

M Currat et al.

MOLECULAR ECOLOGY NOTES (2004)

Article Biochemistry & Molecular Biology

Modern humans did not admix with Neanderthals during their range expansion into Europe

M Currat et al.

PLOS BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Intra-deme molecular diversity in spatially expanding populations

N Ray et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Article Biochemical Research Methods

Generating samples under a Wright-Fisher neutral model of genetic variation

RR Hudson

BIOINFORMATICS (2002)

Article Evolutionary Biology

EASYPOP (version 1.7): A computer program for population genetics simulations

F Balloux

JOURNAL OF HEREDITY (2001)