Related references
Note: Only part of the references are listed.Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12
Chengxin Zhang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2018)
Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age
Joerg Schaarschmidt et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2018)
High precision in protein contact prediction using fully convolutional neural networks and minimal sequence features
David T. Jones et al.
BIOINFORMATICS (2018)
Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks
Yang Liu et al.
CELL SYSTEMS (2018)
DNCON2: improved protein contact prediction using two-level deep convolutional neural networks
Badri Adhikari et al.
BIOINFORMATICS (2018)
Precision Matrix Estimation With ROPE
M. O. Kuismin et al.
JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS (2017)
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
Sheng Wang et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
NeBcon: protein contact map prediction using neural network training coupled with naiive Bayes classifiers
Baoji He et al.
BIOINFORMATICS (2017)
ImageNet Classification with Deep Convolutional Neural Networks
Alex Krizhevsky et al.
COMMUNICATIONS OF THE ACM (2017)
Ridge estimation of inverse covariance matrices from high-dimensional data
Wessel N. van Wieringen et al.
COMPUTATIONAL STATISTICS & DATA ANALYSIS (2016)
An overview of the estimation of large covariance and precision matrices
Jianqing Fan et al.
ECONOMETRICS JOURNAL (2016)
Evaluation of free modeling targets in CASP11 and ROLL
Lisa N. Kinch et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2016)
Protein contact prediction by integrating joint evolutionary coupling analysis and supervised learning
Jianzhu Ma et al.
BIOINFORMATICS (2015)
Improving accuracy of protein contact prediction using balanced network deconvolution
Hai-Ping Sun et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)
MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
David T. Jones et al.
BIOINFORMATICS (2015)
CCMpred-fast and precise prediction of protein residue-residue contacts from correlated mutations
Stefan Seemayer et al.
BIOINFORMATICS (2014)
FreeContact: fast and free software for protein contact prediction from residue co-evolution
Laszlo Kajan et al.
BMC BIOINFORMATICS (2014)
XSEDE: Accelerating Scientific Discovery
John Towns et al.
COMPUTING IN SCIENCE & ENGINEERING (2014)
Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
Magnus Ekeberg et al.
JOURNAL OF COMPUTATIONAL PHYSICS (2014)
SCOPe: Structural Classification of Proteins-extended, integrating SCOP and ASTRAL data and classification of new structures
Naomi K. Fox et al.
NUCLEIC ACIDS RESEARCH (2014)
Network deconvolution as a general method to distinguish direct dependencies in networks
Soheil Feizi et al.
NATURE BIOTECHNOLOGY (2013)
Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
Magnus Ekeberg et al.
PHYSICAL REVIEW E (2013)
Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era
Hetunandan Kamisetty et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
David T. Jones et al.
BIOINFORMATICS (2012)
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
Michael Remmert et al.
NATURE METHODS (2012)
Direct-coupling analysis of residue coevolution captures native contacts across many protein families
Faruck Morcos et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
HIGH-DIMENSIONAL ISING MODEL SELECTION USING l1-REGULARIZED LOGISTIC REGRESSION
Pradeep Ravikumar et al.
ANNALS OF STATISTICS (2010)
Disentangling Direct from Indirect Co-Evolution of Residues in Protein Alignments
Lukas Burger et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Identification of direct residue contacts in protein-protein interaction by message passing
Martin Weigt et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Progress and challenges in protein structure prediction
Yang Zhang
CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)
Sparse inverse covariance estimation with the graphical lasso
Jerome Friedman et al.
BIOSTATISTICS (2008)
Using information theory to search for co-evolving residues in proteins
LC Martin et al.
BIOINFORMATICS (2005)
Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations
I Kass et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)
Share Paper
