Related references
Note: Only part of the references are listed.Genomics: cracking the mysteries of walnuts
Fei Chen et al.
JOURNAL OF GENETICS (2019)
Demographically idiosyncratic responses to climate change and rapid Pleistocene diversification of the walnut genus Juglans (Juglandaceae) revealed by whole-genome sequences
Wei-Ning Bai et al.
NEW PHYTOLOGIST (2018)
Analysis of Brachypodium genomes with genome-wide optical maps
Tingting Zhu et al.
GENOME (2018)
Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size
Jan Dvorak et al.
PLANT JOURNAL (2018)
Genomic Variation Among and Within Six Juglans Species
Kristian A. Stevens et al.
G3-GENES GENOMES GENETICS (2018)
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
Aleksey V. Zimin et al.
GENOME RESEARCH (2017)
Direct determination of diploid genome sequences
Neil I. Weisenfeld et al.
GENOME RESEARCH (2017)
Gene Fractionation and Function in the Ancient Subgenomes of Maize
Simon Renny-Byfield et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
Ming-Cheng Luo et al.
NATURE (2017)
Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube
Fan Zhang et al.
NATURE BIOTECHNOLOGY (2017)
High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
Nicolas Daccord et al.
NATURE GENETICS (2017)
Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets
Liping Zeng et al.
NEW PHYTOLOGIST (2017)
How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes
Andrea Minio et al.
FRONTIERS IN PLANT SCIENCE (2017)
Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences
Wenpan Dong et al.
FRONTIERS IN PLANT SCIENCE (2017)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Phased diploid genome assembly with single-molecule real-time sequencing
Chen-Shan Chin et al.
NATURE METHODS (2016)
The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols
Pedro J. Martinez-Garcia et al.
PLANT JOURNAL (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
Jennifer M. Shelton et al.
BMC GENOMICS (2015)
Persistence of Subgenomes in Paleopolyploid Cotton after 60 My of Evolution
Simon Renny-Byfield et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Tianzhen Zhang et al.
NATURE BIOTECHNOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Resistance to Species of Phytophthora Identified among Clones of Juglans microcarpa x J. regia
Gregory T. Browne et al.
HORTSCIENCE (2015)
THE ORIGIN OF UNUSUAL CHROMOSOME CONSTITUTIONS AMONG NEWLY FORMED ALLOPOLYPLOIDS
Sylwia Oleszczuk et al.
AMERICAN JOURNAL OF BOTANY (2014)
Evolution of Centromeric Retrotransposons in Grasses
Anupma Sharma et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Role of Walnuts in Maintaining Brain Health with Age
Shibu M. Poulose et al.
JOURNAL OF NUTRITION (2014)
Walnuts Decrease Risk of Cardiovascular Disease: A Summary of Efficacy and Biologic Mechanisms
Penny M. Kris-Etherton
JOURNAL OF NUTRITION (2014)
Large-scale phylogenetic analyses reveal fagalean diversification promoted by the interplay of diaspores and environments in the Paleogene
Xiao-Guo Xiang et al.
PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS (2014)
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
Margaret R. Woodhouse et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Walnut Consumption Is Associated with Lower Risk of Type 2 Diabetes in Women
An Pan et al.
JOURNAL OF NUTRITION (2013)
The draft genome of sweet orange (Citrus sinensis)
Qiang Xu et al.
NATURE GENETICS (2013)
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
Ignazio Verde et al.
NATURE GENETICS (2013)
Integrated Fossil and Molecular Data Reveal the Biogeographic Diversification of the Eastern Asian-Eastern North American Disjunct Hickory Genus (Carya Nutt.)
Jing-Bo Zhang et al.
PLOS ONE (2013)
Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
Ernest T. Lam et al.
NATURE BIOTECHNOLOGY (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa
Feng Cheng et al.
PLOS ONE (2012)
The Cotton Centromere Contains a Ty3-gypsy-like LTR Retroelement
Song Luo et al.
PLOS ONE (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
Marcus Lechner et al.
BMC BIOINFORMATICS (2011)
The genome of Theobroma cacao
Xavier Argout et al.
NATURE GENETICS (2011)
Establishing a time-scale for plant evolution
John T. Clarke et al.
NEW PHYTOLOGIST (2011)
Deficiency in Silicon Uptake Affects Cytological, Physiological, and Biochemical Events in the Rice-Bipolaris oryzae Interaction
Leandro J. Dallagnol et al.
PHYTOPATHOLOGY (2011)
Targeted Identification of Short Interspersed Nuclear Element Families Shows Their Widespread Existence and Extreme Heterogeneity in Plant Genomes
Torsten Wenke et al.
PLANT CELL (2011)
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
Vincent Ranwez et al.
PLOS ONE (2011)
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
James C. Schnable et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2010)
Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon
Ahmet L. Tek et al.
CHROMOSOME RESEARCH (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
The genome of the domesticated apple (Malus x domestica Borkh.)
Riccardo Velasco et al.
NATURE GENETICS (2010)
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
Yujun Han et al.
NUCLEIC ACIDS RESEARCH (2010)
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
Dapeng Wang et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Nested Ty3-gypsy retrotransposons of a single Beta procumbens centromere contain a putative chromodomain
Beatrice Weber et al.
CHROMOSOME RESEARCH (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
The B73 Maize Genome: Complexity, Diversity, and Dynamics
Patrick S. Schnable et al.
SCIENCE (2009)
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Brandi L. Cantarel et al.
GENOME RESEARCH (2008)
A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety
Riccardo Velasco et al.
PLOS ONE (2007)
A unified classification system for eukaryotic transposable elements
Thomas Wicker et al.
NATURE REVIEWS GENETICS (2007)
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Olivier Jaillon et al.
NATURE (2007)
Characterization of the centromere and peri-centromere retrotransposons in Brassica rapa and their distribution in related Brassica species
Ki-Byung Lim et al.
PLANT JOURNAL (2007)
Phylogeny of extant and fossil Juglandaceae inferred from the integration of molecular and morphological data sets
Paul S. Manos et al.
SYSTEMATIC BIOLOGY (2007)
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
G. A. Tuskan et al.
SCIENCE (2006)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Genomic duplication, fractionation and the origin of regulatory novelty
RJ Langham et al.
GENETICS (2004)
Deletion polymorphism in wheat chromosome regions with contrasting recombination rates
J Dvorak et al.
GENETICS (2004)
Quality assessment of the human genome sequency
J Schmutz et al.
NATURE (2004)
Understanding mechanisms of novel gene expression in polyploids
TC Osborn et al.
TRENDS IN GENETICS (2003)
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
T Thiel et al.
THEORETICAL AND APPLIED GENETICS (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Evolution, phylogeny, and systematics of the Juglandaceae
PS Manos et al.
ANNALS OF THE MISSOURI BOTANICAL GARDEN (2001)
Share Paper
