Related references
Note: Only part of the references are listed.Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
Soren M. Karst et al.
NATURE BIOTECHNOLOGY (2018)
A global ocean atlas of eukaryotic genes
Quentin Carradec et al.
NATURE COMMUNICATIONS (2018)
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes
Daniel R. Mende et al.
NUCLEIC ACIDS RESEARCH (2017)
Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes
Anna Heintz-Buschart et al.
NATURE MICROBIOLOGY (2017)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
Subspecies in the global human gut microbiome
Paul I. Costea et al.
MOLECULAR SYSTEMS BIOLOGY (2017)
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers et al.
NATURE BIOTECHNOLOGY (2017)
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software
Alexander Sczyrba et al.
NATURE METHODS (2017)
Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur
Andre L. A. Neves et al.
FRONTIERS IN MICROBIOLOGY (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
metaSNV: A tool for metagenomic strain level analysis
Paul Igor Costea et al.
PLOS ONE (2017)
Bracken: estimating species abundance in metagenomics data
Jennifer Lu et al.
PEERJ COMPUTER SCIENCE (2017)
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
Alma E. Parada et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Stephen Nayfach et al.
GENOME RESEARCH (2016)
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
Jaime Huerta-Cepas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Simone S. Li et al.
SCIENCE (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
Claudio Donati et al.
NATURE MICROBIOLOGY (2016)
MetaTrans: an open-source pipeline for metatranscriptomics
Xavier Martinez et al.
SCIENTIFIC REPORTS (2016)
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
Amy Apprill et al.
AQUATIC MICROBIAL ECOLOGY (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
Structure and function of the global ocean microbiome
Shinichi Sunagawa et al.
SCIENCE (2015)
Gut microbiome development along the colorectal adenoma-carcinoma sequence
Qiang Feng et al.
NATURE COMMUNICATIONS (2015)
Temporal and technical variability of human gut metagenomes
Anita Y. Voigt et al.
GENOME BIOLOGY (2015)
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang et al.
PEERJ (2015)
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
Baris E. Suzek et al.
BIOINFORMATICS (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
A better sequence-read simulator program for metagenomics
Stephen Johnson et al.
BMC BIOINFORMATICS (2014)
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Ramiro Logares et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Potential of fecal microbiota for early-stage detection of colorectal cancer
Georg Zeller et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
Biogeography and individuality shape function in the human skin metagenome
Julia Oh et al.
NATURE (2014)
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
H. Bjorn Nielsen et al.
NATURE BIOTECHNOLOGY (2014)
Relating the metatranscriptome and metagenome of the human gut
Eric A. Franzosa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Genomic variation landscape of the human gut microbiome
Siegfried Schloissnig et al.
NATURE (2013)
Gut metagenome in European women with normal, impaired and diabetic glucose control
Fredrik H. Karlsson et al.
NATURE (2013)
Metagenomic species profiling using universal phylogenetic marker genes
Shinichi Sunagawa et al.
NATURE METHODS (2013)
Accurate and universal delineation of prokaryotic species
Daniel R. Mende et al.
NATURE METHODS (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
A metagenome-wide association study of gut microbiota in type 2 diabetes
Junjie Qin et al.
NATURE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
pROC: an open-source package for R and S plus to analyze and compare ROC curves
Xavier Robin et al.
BMC BIOINFORMATICS (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam et al.
NATURE (2011)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
Marcus J. Claesson et al.
NUCLEIC ACIDS RESEARCH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Genome-wide experimental determination of barriers to horizontal gene transfer
Rotem Sorek et al.
SCIENCE (2007)
Dissecting biological dark matter with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
Yann Marcy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli et al.
SCIENCE (2006)
Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
SJ Ott et al.
GUT (2004)
Share Paper
