Related references
Note: Only part of the references are listed.Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification
Giovanni Bussotti et al.
MBIO (2018)
Evidence of putative non-coding RNAs from Leishmania untranslated regions
Felipe Freitas Castro et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2017)
Disclosing 3′UTR cis-elements and putative partners involved in gene expression regulation in Leishmania spp.
Monica Cristina Terrao et al.
PLOS ONE (2017)
Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression
F. Dumetz et al.
MBIO (2017)
Gene Expression in Leishmania Is Regulated Predominantly by Gene Dosage
Stefano A. Iantorno et al.
MBIO (2017)
The Transcriptome of Leishmania major Developmental Stages in Their Natural Sand Fly Vector
Ehud Inbar et al.
MBIO (2017)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Cyclin-Dependent Kinase CRK9, Required for Spliced Leader trans Splicing of Pre-mRNA in Trypanosomes, Functions in a Complex with a New L-Type Cyclin and a Kinetoplastid-Specific Protein
Nitika Badjatia et al.
PLOS PATHOGENS (2016)
Simultaneous transcriptional profiling of Leishmania major and its murine lemacrophage host cell reveals insights into host-pathogen interactions
Laura A. L. Dillon et al.
BMC GENOMICS (2015)
Small RNAs derived from tRNAs and rRNAs are highly enriched in exosomes from both old and new world Leishmania providing evidence for conserved exosomal RNA Packaging
Ulrike Lambertz et al.
BMC GENOMICS (2015)
Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation
Laura A. L. Dillon et al.
NUCLEIC ACIDS RESEARCH (2015)
Genome-wide analysis of small nucleolar RNAs of Leishmania major reveals a rich repertoire of RNAs involved in modification and processing of rRNA
Dror Eliaz et al.
RNA BIOLOGY (2015)
Ribosomal proteins: functions beyond the ribosome
Xiang Zhou et al.
JOURNAL OF MOLECULAR CELL BIOLOGY (2015)
The genome of Leishmania panamensis: insights into genomics of the L. (Viannia) subgenus
Alejandro Llanes et al.
SCIENTIFIC REPORTS (2015)
Amastin Knockdown in Leishmania braziliensis Affects Parasite-Macrophage Interaction and Results in Impaired Viability of Intracellular Amastigotes
Rita Marcia Cardoso de Paiva et al.
PLOS PATHOGENS (2015)
Comparative Life Cycle Transcriptomics Revises Leishmania mexicana Genome Annotation and Links a Chromosome Duplication with Parasitism of Vertebrates
Michael Fiebig et al.
PLOS PATHOGENS (2015)
Molecular Chaperones of Leishmania: Central Players in Many Stress-Related and -Unrelated Physiological Processes
Jose M. Requena et al.
BIOMED RESEARCH INTERNATIONAL (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Prediction and classification of ncRNAs using structural information
Bharat Panwar et al.
BMC GENOMICS (2014)
Extensive stage-regulation of translation revealed by ribosome profiling of Trypanosoma brucei
Bryan C. Jensen et al.
BMC GENOMICS (2014)
Characterization of the pattern of ribosomal protein L19 production during the lifecycle of Leishmania spp.
Janayna Hammes de Almeida-Bizzo et al.
EXPERIMENTAL PARASITOLOGY (2014)
ptRNApred: computational identification and classification of post-transcriptional RNA
Yask Gupta et al.
NUCLEIC ACIDS RESEARCH (2014)
The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq
Alberto Rastrojo et al.
BMC GENOMICS (2013)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Nucleolar Trafficking of the Mouse Mammary Tumor Virus Gag Protein Induced by Interaction with Ribosomal Protein L9
Andrea R. Beyer et al.
JOURNAL OF VIROLOGY (2013)
The structure and repertoire of small interfering RNAs in Leishmania (Viannia) braziliensis reveal diversification in the trypanosomatid RNAi pathway
Vanessa D. Atayde et al.
MOLECULAR MICROBIOLOGY (2013)
Trafficking and release of Leishmania metacyclic HASPB on macrophage invasion
Lorna M. MacLean et al.
CELLULAR MICROBIOLOGY (2012)
Association between an Emerging Disseminated form of Leishmaniasis and Leishmania (Viannia) braziliensis Strain Polymorphisms
Adriano Queiroz et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
Developmental regulation of gene expression in the absence of transcriptional control: The case of kinetoplastids
Susanne Kramer
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2012)
In silico identification of conserved intercoding sequences in Leishmania genomes: Unraveling putative cis-regulatory elements
E. J. R. Vasconcelos et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2012)
Protection of Extraribosomal RPL13a by GAPDH and Dysregulation by S-Nitrosylation
Jie Jia et al.
MOLECULAR CELL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
RNA-seq analysis of small RNPs in Trypanosoma brucei reveals a rich repertoire of non-coding RNAs
Shulamit Michaeli et al.
NUCLEIC ACIDS RESEARCH (2012)
Proteinases as virulence factors in Leishmania spp. infection in mammals
Mariana Silva-Almeida et al.
PARASITES & VECTORS (2012)
Principles of Translational Control: An Overview
John W. B. Hershey et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)
ATG5 Is Essential for ATG8-Dependent Autophagy and Mitochondrial Homeostasis in Leishmania major
Roderick A. M. Williams et al.
PLOS PATHOGENS (2012)
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
Hanbo Chen et al.
BMC BIOINFORMATICS (2011)
Gene expression regulation in trypanosomatids
Javier G. De Gaudenzi et al.
ESSAYS IN BIOCHEMISTRY: MOLECULAR PARASITOLOGY (2011)
Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania
Matthew B. Rogers et al.
GENOME RESEARCH (2011)
Expression of distinct RNAs from 3′ untranslated regions
Tim R. Mercer et al.
NUCLEIC ACIDS RESEARCH (2011)
RNA degradome-its biogenesis and functions
Paulina Jackowiak et al.
NUCLEIC ACIDS RESEARCH (2011)
Diversity in the 18S SSU rRNA V4 hyper-variable region of Theileria spp. in Cape buffalo (Syncerus caffer) and cattle from southern Africa
Ben J. Mans et al.
PARASITOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Depletion of ribosomal protein L37 occurs in response to DNA damage and activates p53 through the L11/MDM2 pathway
Susana Llanos et al.
CELL CYCLE (2010)
The Pfam protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2010)
TriTrypDB: a functional genomic resource for the Trypanosomatidae
Martin Aslett et al.
NUCLEIC ACIDS RESEARCH (2010)
RNPomics: Defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles
Mathieu Rederstorff et al.
NUCLEIC ACIDS RESEARCH (2010)
The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution
Nikolay G. Kolev et al.
PLOS PATHOGENS (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis Software
Roberto T. Arrial et al.
BMC BIOINFORMATICS (2009)
Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum
Annie Rochette et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species
Annie Rochette et al.
BMC GENOMICS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Extracellular nucleotide metabolism in Leishmania:: influence of adenosine in the establishment of infection
Eduardo de Almeida Marques-da-Silva et al.
MICROBES AND INFECTION (2008)
Post-transcriptional regulation of gene expression in trypanosomes and leishmanias
Christine Clayton et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2007)
Protein turnover and differentiation in Leishmania
Sebastien Besteiro et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2007)
Transmission of Leishmania metacyclic promastigotes by phlebotomine sand flies
Paul A. Bates
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2007)
Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion
Hitoshi Nakatogawa et al.
CELL (2007)
Systems perspectives on mRNA processing
Adrienne E. Mckee et al.
CELL RESEARCH (2007)
Degradation of pteridine reductase 1 (PTR1) enzyme during growth phase in the protozoan parasite Leishmania donovani
Pranav Kumar et al.
EXPERIMENTAL PARASITOLOGY (2007)
Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation
A. Saxena et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2007)
Comparative genomics: From genotype to disease phenotype in the leishmaniases
Deborah F. Smith et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2007)
A novel class of developmentally regulated noncoding RNAs in Leishmania
Carole Dumas et al.
EUKARYOTIC CELL (2006)
Amastin peptide-binding antibodies as biomarkers of active human visceral leishmaniasis
Sima Rafati et al.
CLINICAL AND VACCINE IMMUNOLOGY (2006)
Cysteine peptidases CPA and CPB are vital for autophagy and differentiation in Leishmania mexicana
Roderick A. Williams et al.
MOLECULAR MICROBIOLOGY (2006)
Non-coding RNA
JS Mattick et al.
HUMAN MOLECULAR GENETICS (2006)
Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana
TR Holzer et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2006)
The functional genomics of noncoding RNA
JS Mattick
SCIENCE (2005)
Pre-mRNA trans-splicing:: from kinetoplastids to mammals, an easy language for life diversity
MG Mayer et al.
MEMORIAS DO INSTITUTO OSWALDO CRUZ (2005)
The genome of the kinetoplastid parasite, Leishmania major
AC Ivens et al.
SCIENCE (2005)
Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp.
A Rochette et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2005)
RNA regulation: a new genetics?
JS Mattick
NATURE REVIEWS GENETICS (2004)
Leishmaniasis: current situation and new perspectives
P Desjeux
COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES (2004)
Leishmania (Viannia):: genetic analysis of cutaneous and mucosal strains isolated from the same patient
P Cuervo et al.
EXPERIMENTAL PARASITOLOGY (2004)
Cell-cycle-dependent translation of histone mRNAs is the key control point for regulation of histone biosynthesis in Leishmania infantum
M Soto et al.
BIOCHEMICAL JOURNAL (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
Protozomics: Trypanosomatid parasite genetics comes of age
SM Beverley
NATURE REVIEWS GENETICS (2003)
An extensive network of coupling among gene expression machines
T Maniatis et al.
NATURE (2002)
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
Jo Vandesompele et al.
GENOME BIOLOGY (2002)
A new mathematical model for relative quantification in real-time RT-PCR
MW Pfaffl
NUCLEIC ACIDS RESEARCH (2001)
Expression and subcellular localization of cpn60 protein family members in Leishmania donovani
A Schlüter et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION (2000)
Share Paper
