Related references
Note: Only part of the references are listed.ViroFind: A novel target-enrichment deep-sequencing platform reveals a complex JC virus population in the brain of PML patients
Spyros Chalkias et al.
PLOS ONE (2018)
OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes
Brian J. Beliveau et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018
Katherine J. Siddle et al.
NEW ENGLAND JOURNAL OF MEDICINE (2018)
Fast Metagenomic Binning via Hashing and Bayesian Clustering
Victoria Popic et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2018)
Rapid Detection of Powassan Virus in a Patient With Encephalitis by Metagenomic Sequencing
Anne Piantadosi et al.
CLINICAL INFECTIOUS DISEASES (2018)
Zika virus evolution and spread in the Americas
Hayden C. Metsky et al.
NATURE (2017)
Virus genomes reveal factors that spread and sustained the Ebola epidemic
Gytis Dudas et al.
NATURE (2017)
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Joshua Quick et al.
NATURE PROTOCOLS (2017)
Clinical and biological insights from viral genome sequencing
Charlotte J. Houldcroft et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Noninvasive prenatal diagnosis of 21-Hydroxylase deficiency using target capture sequencing of maternal plasma DNA
Dingyuan Ma et al.
SCIENTIFIC REPORTS (2017)
Enrichment allows identification of diverse, rare elements in metagenomic resistomevirulome sequencing
Noelle R. Noyes et al.
MICROBIOME (2017)
An Exon-Capture System for the Entire Class Ophiuroidea
Andrew F. Hugall et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Database resources of the National Center for Biotechnology Information
Richa Agarwala et al.
NUCLEIC ACIDS RESEARCH (2016)
Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes
Emma Thomson et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method
Julianne R. Brown et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design
Christoph Mayer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America
Michael Worobey et al.
NATURE (2016)
Redefining the invertebrate RNA virosphere
Mang Shi et al.
NATURE (2016)
A global map of genetic diversity in Babesia microti reveals strong population structure and identifies variants associated with clinical relapse
Jacob E. Lemieux et al.
NATURE MICROBIOLOGY (2016)
Multiplexed Metagenomic Deep Sequencing To Analyze the Composition of High-Priority Pathogen Reagents
Michael R. Wilson et al.
MSYSTEMS (2016)
Mash: fast genome and metagenome distance estimation using MinHash
Brian D. Ondov et al.
GENOME BIOLOGY (2016)
Whole genome capture of vector-borne pathogens from mixed DNA samples: a case study of Borrelia burgdorferi
Giovanna Carpi et al.
BMC GENOMICS (2015)
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
Daniel J. Park et al.
CELL (2015)
Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus
Kristian G. Andersen et al.
CELL (2015)
Enhanced virome sequencing using targeted sequence capture
Todd N. Wylie et al.
GENOME RESEARCH (2015)
Global circulation patterns of seasonal influenza viruses vary with antigenic drift
Trevor Bedford et al.
NATURE (2015)
Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis
Thomas Briese et al.
MBIO (2015)
Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa
Matthew H. Stremlau et al.
PLOS NEGLECTED TROPICAL DISEASES (2015)
NCBI Viral Genomes Resource
J. Rodney Brister et al.
NUCLEIC ACIDS RESEARCH (2015)
Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data
Xavier Didelot et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage
Aaron M. Newman et al.
NATURE MEDICINE (2014)
Comparison of Illumina and 454 Deep Sequencing in Participants Failing Raltegravir-Based Antiretroviral Therapy
Jonathan Z. Li et al.
PLOS ONE (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples
Christian B. Matranga et al.
GENOME BIOLOGY (2014)
Counting absolute numbers of molecules using unique molecular identifiers
Teemu Kivioja et al.
NATURE METHODS (2012)
ViPR: an open bioinformatics database and analysis resource for virology research
Brett E. Pickett et al.
NUCLEIC ACIDS RESEARCH (2012)
Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection
Matthew R. Henn et al.
PLOS PATHOGENS (2012)
Specific Capture and Whole-Genome Sequencing of Viruses from Clinical Samples
Daniel P. Depledge et al.
PLOS ONE (2011)
Culex Flavivirus and West Nile Virus Mosquito Coinfection and Positive Ecological Association in Chicago, United States
Christina M. Newman et al.
VECTOR-BORNE AND ZOONOTIC DISEASES (2011)
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
A. P. Jason de Koning et al.
PLOS GENETICS (2011)
Hybrid selection for sequencing pathogen genomes from clinical samples
Alexandre Melnikov et al.
GENOME BIOLOGY (2011)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Efficient oligonucleotide probe selection for pan-genomic tiling arrays
Adam M. Phillippy et al.
BMC BIOINFORMATICS (2009)
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
Andreas Gnirke et al.
NATURE BIOTECHNOLOGY (2009)
PlasmoDB: a functional genomic database for malaria parasites
Cristina Aurrecoechea et al.
NUCLEIC ACIDS RESEARCH (2009)
PrimerHunter: a primer design tool for PCR-based virus subtype identification
Jorge Duitama et al.
NUCLEIC ACIDS RESEARCH (2009)
Identification of repeat structure in large genomes using repeat probability clouds
Wanjun Gu et al.
ANALYTICAL BIOCHEMISTRY (2008)
Near-optimal hashing algorithms for approximate nearest neighbor in high dimensions
Alexandr Andoni et al.
COMMUNICATIONS OF THE ACM (2008)
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
Pablo Yarza et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2008)
Comprehensive viral oligonucleotide probe design using conserved protein regions
Omar J. Jabado et al.
NUCLEIC ACIDS RESEARCH (2008)
Panmicrobial oligonucleotide array for diagnosis of infectious diseases
Gustavo Palacios et al.
EMERGING INFECTIOUS DISEASES (2007)
Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments
Omar J. Jabado et al.
NUCLEIC ACIDS RESEARCH (2006)
The bacterial species definition in the genomic era
Konstantinos T. Konstantinidis et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
DNA-BAR: distinguisher selection for DNA barcoding
B DasGupa et al.
BIOINFORMATICS (2005)
Microarray-based detection and genotyping of viral pathogens
D Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Species-level identification of orthopoxviruses with an oligonucleotide microchip
S Lapa et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2002)
Genetic diversity among lassa virus strains
MD Bowen et al.
JOURNAL OF VIROLOGY (2000)
Min-wise independent permutations
AZ Broder et al.
JOURNAL OF COMPUTER AND SYSTEM SCIENCES (2000)
Share Paper
