4.6 Review

Deciphering Within-Host Microevolution of Mycobacterium tuberculosis through Whole-Genome Sequencing: the Phenotypic Impact and Way Forward

Related references

Note: Only part of the references are listed.
Article Critical Care Medicine

Drug-Penetration Gradients Associated with Acquired Drug Resistance in Patients with Tuberculosis

Keertan Dheda et al.

AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2018)

Article Biochemistry & Molecular Biology

UniProt: the universal protein knowledgebase

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Microbiology

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

Antonina A. Votintseva et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2017)

Article Medicine, General & Internal

Transmission of Extensively Drug-Resistant Tuberculosis in South Africa

N. Sarita Shah et al.

NEW ENGLAND JOURNAL OF MEDICINE (2017)

Article Multidisciplinary Sciences

Transmission is a Noticeable Cause of Resistance Among Treated Tuberculosis Patients in Shanghai, China

Chijioke A. Nsofor et al.

SCIENTIFIC REPORTS (2017)

Article Immunology

Comparative Genomic Analysis of Two Clonally Related Multidrug Resistant Mycobacterium tuberculosis by Single Molecule Real Time Sequencing

Kenneth Siu-Sing Leung et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2017)

Article Microbiology

Mycobacterium tuberculosis Subculture Results in Loss of Potentially Clinically Relevant Heteroresistance

John Z. Metcalfe et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2017)

Article Biotechnology & Applied Microbiology

The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy

Andrej Trauner et al.

GENOME BIOLOGY (2017)

Article Infectious Diseases

Evaluation of resistance acquisition during tuberculosis treatment using whole genome sequencing

Cinara Silva Feliciano et al.

BRAZILIAN JOURNAL OF INFECTIOUS DISEASES (2016)

Article Biochemistry & Molecular Biology

Genomic diversity in autopsy samples reveals within-host dissemination of HIV-associated Mycobacterium tuberculosis

Tami D. Lieberman et al.

NATURE MEDICINE (2016)

Article Biochemical Research Methods

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

Yongwook Choi et al.

BIOINFORMATICS (2015)

Letter Medicine, General & Internal

Acquired Resistance to Bedaquiline and Delamanid in Therapy for Tuberculosis

Guido V. Bloemberg et al.

NEW ENGLAND JOURNAL OF MEDICINE (2015)

Article Microbiology

Diversity of Mycobacterium tuberculosis across Evolutionary Scales

Mary B. O'Neill et al.

PLOS PATHOGENS (2015)

Article Microbiology

Evolution and Transmission Patterns of Extensively Drug-Resistant Tuberculosis in China

Feifei Wang et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)

Review Genetics & Heredity

Sequencing depth and coverage: key considerations in genomic analyses

David Sims et al.

NATURE REVIEWS GENETICS (2014)

Article Multidisciplinary Sciences

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

Francesc Coll et al.

NATURE COMMUNICATIONS (2014)

Article Biotechnology & Applied Microbiology

Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient

Vegard Eldholm et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Evidence for the role of Mycobacteriumtuberculosis RecG helicase in DNA repair and recombination

Roshan S. Thakur et al.

FEBS JOURNAL (2013)

Article Microbiology

Differences in gene expression between clonal variants of Mycobacterium tuberculosis emerging as a result of microevolution

Laura Perez-Lago et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2013)

Article Infectious Diseases

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

Timothy M. Walker et al.

LANCET INFECTIOUS DISEASES (2013)

Review Genetics & Heredity

Synonymous but not the same: the causes and consequences of codon bias

Joshua B. Plotkin et al.

NATURE REVIEWS GENETICS (2011)

Article Microbiology

Microevolution of Mycobacterium tuberculosis in a Tuberculosis Patient

Sahal A. M. Al-Hajoj et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

Real-Time DNA Sequencing from Single Polymerase Molecules

John Eid et al.

SCIENCE (2009)

Article Microbiology

A mycobacterium ESX-1-Secreted virulence factor with unique requirements for export

Bryant McLaughlin et al.

PLOS PATHOGENS (2007)

Article Biochemistry & Molecular Biology

Reinvestigating the codon and amino acid usage of S-cerevisiae genome:: A new insight from protein secondary structure analysis

Bratati Kahali et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2007)

Article Critical Care Medicine

Reinfection and mixed infection cause changing Mycobacterium tuberculosis drug-resistance patterns

A van Rie et al.

AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2005)

Article Biochemistry & Molecular Biology

Dissecting the mechanism and assembly of a complex virulence mycobacterial lipid

OA Trivedi et al.

MOLECULAR CELL (2005)

Article Microbiology

Altered NADH/NAD+ ratio mediates coresistance to isoniazid and ethionamide in mycobacteria

C Vilchèze et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2005)

Article Biochemistry & Molecular Biology

Sequence analysis of twin ATP binding cassette proteins involved in translational control, antibiotic resistance, and ribonuclease L inhibition

ID Kerr

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)

Article Microbiology

Analysis of clonal composition of Mycobacterium tuberculosis isolates in primary infections in children

D Garcia de Viedma et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

Interaction studies on proteins encoded by the phthiocerol dimycocerosate locus of Mycobacterium tuberculosis

A Rao et al.

MOLECULAR GENETICS AND GENOMICS (2004)

Article Biochemistry & Molecular Biology

Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome

P Supply et al.

MOLECULAR MICROBIOLOGY (2000)