4.5 Review

Exploring bacterial resistome and resistance dessemination: an approach of whole genome sequencing

Related references

Note: Only part of the references are listed.
Review Biotechnology & Applied Microbiology

Antibiotics in the clinical pipeline at the end of 2015

Mark S. Butler et al.

JOURNAL OF ANTIBIOTICS (2017)

Article Microbiology

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

Antonina A. Votintseva et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations

Rafal Mostowy et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Review Microbiology

Regulation of antibiotic-resistance by non-coding RNAs in bacteria

Daniel Dar et al.

CURRENT OPINION IN MICROBIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Whole-Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter spp.

S. Zhao et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Infectious Diseases

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data

Philip T. L. C. Clausen et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2016)

Article Microbiology

Whole-Genome Multilocus Sequence Typing of Extended-Spectrum-Beta-Lactamase-Producing Enterobacteriaceae

Marjolein F. Q. Kluytmans-van den Bergh et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2016)

Review Genetics & Heredity

A comparison of tools for the simulation of genomic next-generation sequencing data

Merly Escalona et al.

NATURE REVIEWS GENETICS (2016)

Article Multidisciplinary Sciences

Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria

Daniel Dar et al.

SCIENCE (2016)

Review Biochemistry & Molecular Biology

Mechanisms of resistance to aminoglycoside antibiotics: overview and perspectives

Sylvie Garneau-Tsodikova et al.

MEDCHEMCOMM (2016)

Article Multidisciplinary Sciences

A diverse intrinsic antibiotic resistome from a cave bacterium

Andrew C. Pawlowski et al.

NATURE COMMUNICATIONS (2016)

Article Microbiology

SSTAR, a Stand-Alone Easy-To-Use Antimicrobial Resistance Gene Predictor

Tom J. B. de Man et al.

MSPHERE (2016)

Review Genetics & Heredity

Oxford Nanopore MinION Sequencing and Genome Assembly

Hengyun Lu et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2016)

Article Biotechnology & Applied Microbiology

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

Miten Jain et al.

GENOME BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Targets for Combating the Evolution of Acquired Antibiotic Resistance

Matthew J. Culyba et al.

BIOCHEMISTRY (2015)

Article Microbiology

Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology

Stephen J. Salipante et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2015)

Article Multidisciplinary Sciences

Global trends in antimicrobial use in food animals

Thomas P. Van Boeckel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

Kathryn E. Holt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Review Critical Care Medicine

Carbapenemase-Producing Enterobacteriaceae

Yohei Doi et al.

SEMINARS IN RESPIRATORY AND CRITICAL CARE MEDICINE (2015)

Article Medicine, General & Internal

High prevalence of antibiotic resistance in nasopharyngeal bacterial isolates from healthy children in rural Uganda: A cross-sectional study

Elizeus Rutebemberwa et al.

UPSALA JOURNAL OF MEDICAL SCIENCES (2015)

Review Microbiology

Interaction of antibacterial compounds with RND efflux pumps in Pseudomonas aeruginosa

Juerg Dreier et al.

FRONTIERS IN MICROBIOLOGY (2015)

Review Genetics & Heredity

PacBio Sequencing and Its Applications

Anthony Rhoads et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2015)

Article Microbiology

Draft Genome Sequences of Klebsiella variicola Plant Isolates

Esperanza Martinez-Romero et al.

GENOME ANNOUNCEMENTS (2015)

Article Biochemistry & Molecular Biology

The Wag31 protein interacts with AccA3 and coordinates cell wall lipid permeability and lipophilic drug resistance in Mycobacterium smegmatis

Wen-xi Xu et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2014)

Article Biochemistry & Molecular Biology

Estimating genotype error rates from high-coverage next-generation sequence data

Jeffrey D. Wall et al.

GENOME RESEARCH (2014)

Letter Microbiology

Detection of blaNDM-4 in Escherichia coli from hospital sewage

Asad U. Khan et al.

JOURNAL OF MEDICAL MICROBIOLOGY (2014)

Article Infectious Diseases

Global antibiotic consumption 2000 to 2010: an analysis of Cross Mark 742 national pharmaceutical sales data

Thomas P. Van Boeckel et al.

LANCET INFECTIOUS DISEASES (2014)

Review Genetics & Heredity

Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

W. Florian Fricke et al.

NATURE REVIEWS GENETICS (2014)

Review Genetics & Heredity

Whole-genome sequencing to control antimicrobial resistance

Claudio U. Koeser et al.

TRENDS IN GENETICS (2014)

Review Medicine, General & Internal

Towards a global antibiotic resistance surveillance system: a primer for a roadmap

Hajo Grundmann

UPSALA JOURNAL OF MEDICAL SCIENCES (2014)

Editorial Material Genetics & Heredity

Single cell genomics of bacterial pathogens: outlook for infectious disease research

Jeffrey S. McLean et al.

GENOME MEDICINE (2014)

Review Microbiology

Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria

Abiola O. Olaitan et al.

FRONTIERS IN MICROBIOLOGY (2014)

Review Infectious Diseases

Old and New Glycopeptide Antibiotics: Action and Resistance

Elisa Binda et al.

ANTIBIOTICS-BASEL (2014)

Article Microbiology

The Comprehensive Antibiotic Resistance Database

Andrew G. McArthur et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2013)

Editorial Material Pediatrics

What is next generation sequencing?

Sam Behjati et al.

ARCHIVES OF DISEASE IN CHILDHOOD-EDUCATION AND PRACTICE EDITION (2013)

Review Infectious Diseases

Rapid bacterial genome sequencing: methods and applications in clinical microbiology

C. Bertelli et al.

CLINICAL MICROBIOLOGY AND INFECTION (2013)

Article Biochemistry & Molecular Biology

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

Helena M. B. Seth-Smith et al.

GENOME RESEARCH (2013)

Article Infectious Diseases

An adaptive response of Enterobacter aerogenes to imipenem: regulation of porin balance in clinical isolates

Jean-Philippe Lavigne et al.

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2013)

Article Biochemical Research Methods

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA

Helena M. B. Seth-Smith et al.

NATURE PROTOCOLS (2013)

Review Microbiology

The intrinsic resistome of bacterial pathogens

Jorge Olivares et al.

FRONTIERS IN MICROBIOLOGY (2013)

Review Microbiology

Resistance to Linezolid Caused by Modifications at Its Binding Site on the Ribosome

Katherine S. Long et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2012)

Review Microbiology

Adaptive and Mutational Resistance: Role of Porins and Efflux Pumps in Drug Resistance

Lucia Fernandez et al.

CLINICAL MICROBIOLOGY REVIEWS (2012)

Article Infectious Diseases

Identification of acquired antimicrobial resistance genes

Ea Zankari et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Review Genetics & Heredity

Transforming clinical microbiology with bacterial genome sequencing

Xavier Didelot et al.

NATURE REVIEWS GENETICS (2012)

Article Cell Biology

Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing

Evan S. Snitkin et al.

SCIENCE TRANSLATIONAL MEDICINE (2012)

Editorial Material Microbiology

Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

Claudio U. Koeser et al.

PLOS PATHOGENS (2012)

Review Microbiology

Acquired antibiotic resistance genes: an overview

Angela H. A. M. van Hoek et al.

FRONTIERS IN MICROBIOLOGY (2011)

Review Genetics & Heredity

The Genomic Enzymology of Antibiotic Resistance

Mariya Morar et al.

ANNUAL REVIEW OF GENETICS, VOL 44 (2010)

Review Microbiology

Diversity, Epidemiology, and Genetics of Class D beta-Lactamases

Laurent Poirel et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2010)

Article Computer Science, Hardware & Architecture

Protein Interactome Analysis for Countering Pathogen Drug Resistance

Limsoon Wong et al.

JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY (2010)

Review Microbiology

Origins and Evolution of Antibiotic Resistance

Julian Davies et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2010)

Review Biochemistry & Molecular Biology

Multidrug Resistance in Bacteria

Hiroshi Nikaido

ANNUAL REVIEW OF BIOCHEMISTRY (2009)

Review Respiratory System

Epidemiology and clinical management of XDR-TB: a systematic review by TBNET

G. Sotgiu et al.

EUROPEAN RESPIRATORY JOURNAL (2009)

Article Biochemistry & Molecular Biology

ARDB-Antibiotic Resistance Genes Database

Bo Liu et al.

NUCLEIC ACIDS RESEARCH (2009)

Review Biotechnology & Applied Microbiology

Mechanism of action of and resistance to quinolones

Anna Fabrega et al.

MICROBIAL BIOTECHNOLOGY (2009)

Article Biotechnology & Applied Microbiology

Evaluation of next generation sequencing platforms for population targeted sequencing studies

Olivier Harismendy et al.

GENOME BIOLOGY (2009)

Review Microbiology

Functional role of bacterial multidrug efflux pumps in microbial natural ecosystems

Jose Luis Martinez et al.

FEMS MICROBIOLOGY REVIEWS (2009)

Review Microbiology

Ins and Outs of Major Facilitator Superfamily, Antiporters

Christopher J. Law et al.

ANNUAL REVIEW OF MICROBIOLOGY (2008)

Review Pharmacology & Pharmacy

Antimicrobial Resistance in Foodborne Pathogens - A Cause for Concern?

Ciara Walsh et al.

CURRENT DRUG TARGETS (2008)

Article Multidisciplinary Sciences

Accurate whole human genome sequencing using reversible terminator chemistry

David R. Bentley et al.

NATURE (2008)

Article Biochemical Research Methods

A large genome center's improvements to the Illumina sequencing system

Michael A. Quail et al.

NATURE METHODS (2008)

Article Biochemistry & Molecular Biology

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

Juliane C. Dohm et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Microbiology

Penicillin-binding proteins and beta-lactam resistance

Andre Zapun et al.

FEMS MICROBIOLOGY REVIEWS (2008)

Review Public, Environmental & Occupational Health

Management of multidrug-resistant organisms in health care settings, 2006

Jane D. Siegel et al.

AMERICAN JOURNAL OF INFECTION CONTROL (2007)

Article Immunology

Worldwide emergence of extensively drug-resistant tuberculosis

N. Sarita Shah et al.

EMERGING INFECTIOUS DISEASES (2007)

Review Microbiology

Distribution and physiology of ABC-Type transporters contributing to multidrug resistance in bacteria

Jacek Lubelski et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2007)

Review Microbiology

The antibiotic resistome: the nexus of chemical and genetic diversity

Gerard D. Wright

NATURE REVIEWS MICROBIOLOGY (2007)

Review Microbiology

Insertion sequences in prokaryotic genomes

Patricia Siguier et al.

CURRENT OPINION IN MICROBIOLOGY (2006)

Article Mathematical & Computational Biology

Antibiotic Resistance Genes Online (ARGO): A Database on vancomycin and beta-lactam resistance genes

Joy Scaria et al.

BIOINFORMATION (2005)

Article Multidisciplinary Sciences

Comprehensive human genome amplification using multiple displacement amplification

FB Dean et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Medicine, General & Internal

Linezolid resistance in a clinical isolate of Staphylococcus aureus

S Tsiodras et al.

LANCET (2001)

Review Medical Laboratory Technology

Integrons: an antibiotic resistance gene capture and expression system

MC Ploy et al.

CLINICAL CHEMISTRY AND LABORATORY MEDICINE (2000)