Journal
BIOLOGICAL CONSERVATION
Volume 183, Issue -, Pages 93-102Publisher
ELSEVIER SCI LTD
DOI: 10.1016/j.biocon.2014.11.017
Keywords
Environmental DNA; Water; Sediment; Fishes; Rare species; Genetic monitoring; Noninvasive genetic sampling; Invasive species; Asian carp
Funding
- Great Lakes Fishery Trust [2011.1197]
- NSF IGERT [0504495]
Ask authors/readers for more resources
Genetic identification of aqueous environmental DNA (eDNA) provides site occupancy inferences for rare aquatic macrofauna that are often easier to obtain than direct observations of organisms. This relative ease makes eDNA sampling a valuable tool for conservation biology. Research on the origin, state, transport, and fate of eDNA shed by aquatic macrofauna is needed to describe the spatiotemporal context for eDNA-based occupancy inferences and to guide eDNA sampling design. We tested the hypothesis that eDNA is more concentrated in surficial sediments than in surface water by measuring the concentration of aqueous and sedimentary eDNA from an invasive fish, bigheaded Asian carp (Hypophthalmichthys spp.), in experimental ponds and natural rivers. We modified a simple, low-cost DNA extraction method to yield inhibitor-free eDNA from both sediment and water samples. Carp eDNA was 8-1800 times more concentrated per gram of sediment than per milliliter of water and was detected in sediments up to 132 days after carp removal - five times longer than any previous reports of macrobial eDNA persistence in water. These results may be explained by particle settling and/or retarded degradation of sediment-adsorbed DNA molecules. Compared to aqueous eDNA, sedimentary eDNA could provide a more abundant and longer-lasting source of genetic material for inferring current-or-past site occupancy by aquatic macrofauna, particularly benthic species. However, resuspension and transport of sedimentary eDNA could complicate the spatiotemporal inferences from surface water sampling, which is currently the predominant eDNA-based approach. We discuss these implications in the context of conservation-oriented monitoring in aquatic ecosystems. (C) 2014 The Authors. Published by Elsevier Ltd.
Authors
I am an author on this paper
Click your name to claim this paper and add it to your profile.
Reviews
Recommended
No Data Available