Related references
Note: Only part of the references are listed.Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
Xiaoyu Chen et al.
BIOINFORMATICS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Rachid Ounit et al.
BMC GENOMICS (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Omega: an Overlap-graph de novo Assembler for Metagenomics
Bahlul Haider et al.
BIOINFORMATICS (2014)
LUMPY: a probabilistic framework for structural variant discovery
Ryan M. Layer et al.
GENOME BIOLOGY (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
Scott C. Clark et al.
BIOINFORMATICS (2013)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Time-course network analysis reveals TNF-α can promote G1/S transition of cell cycle in vascular endothelial cells
Yang Chen et al.
BIOINFORMATICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
Toshiaki Namiki et al.
NUCLEIC ACIDS RESEARCH (2012)
Metagenomic Exploration of Viruses throughout the Indian Ocean
Shannon J. Williamson et al.
PLOS ONE (2012)
Ray Meta: scalable de novo metagenome assembly and profiling
Sebastien Boisvert et al.
GENOME BIOLOGY (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
Interactive metagenomic visualization in a Web browser
Brian D. Ondov et al.
BMC BIOINFORMATICS (2011)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
Ab initio gene identification in metagenomic sequences
Wenhan Zhu et al.
NUCLEIC ACIDS RESEARCH (2010)
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
Kai Ye et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Share Paper
