Journal
BIOINFORMATICS
Volume 32, Issue 5, Pages 798-800Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btv655
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Funding
- NIH/NIGMS [R01GM111510]
- Arizona's Technology and Research Initiative Fund
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Rule-based models are analyzed with specialized simulators, such as those provided by the BioNetGen and NFsim open-source software packages. Here, we present BioNetFit, a general-purpose fitting tool that is compatible with BioNetGen and NFsim. BioNetFit is designed to take advantage of distributed computing resources. This feature facilitates fitting (i.e. optimization of parameter values for consistency with data) when simulations are computationally expensive.
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