4.7 Article

ASBench: benchmarking sets for allosteric discovery

Journal

BIOINFORMATICS
Volume 31, Issue 15, Pages 2598-2600

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btv169

Keywords

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Funding

  1. National Natural Science Foundation of China [81322046, 81302698, 81473137]
  2. Shanghai Rising-Star Program [13QA1402300]

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Allostery allows for the fine-tuning of protein function. Targeting allosteric sites is gaining increasing recognition as a novel strategy in drug design. The key challenge in the discovery of allosteric sites has strongly motivated the development of computational methods and thus high-quality, publicly accessible standard data have become indispensable. Here, we report benchmarking data for experimentally determined allosteric sites through a complex process, including a 'Core set' with 235 unique allosteric sites and a 'Core-Diversity set' with 147 structurally diverse allosteric sites. These benchmarking sets can be exploited to develop efficient computational methods to predict unknown allosteric sites in proteins and reveal unique allosteric ligand-protein interactions to guide allosteric drug design.

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