4.7 Article

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Journal

BIOINFORMATICS
Volume 31, Issue 20, Pages 3380-3383

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btv341

Keywords

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Funding

  1. NIH, United States [GM070923]
  2. European Union [FP7 242167]
  3. BBSRC Signalling Institute Strategic Programme [BBS/E/B/000C0419]
  4. National Science Foundation grant [CCF-1218095]
  5. EU [332020]
  6. Google Inc.
  7. Federal Ministry of Education and Research (BMBF, Germany) [0315756]
  8. Novo Nordisk Foundation
  9. NIH [HHSN272201000053C]
  10. BBSRC [BBS/E/B/000C0419] Funding Source: UKRI
  11. Biotechnology and Biological Sciences Research Council [BBS/E/B/000C0419] Funding Source: researchfish
  12. NNF Center for Biosustainability [Network Reconstruction] Funding Source: researchfish
  13. Novo Nordisk Fonden [NNF10CC1016517] Funding Source: researchfish

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JSBML, the official pure Java programming library for the Systems Biology Markup Language (SBML) format, has evolved with the advent of different modeling formalisms in systems biology and their ability to be exchanged and represented via extensions of SBML. JSBML has matured into a major, active open-source project with contributions from a growing, international team of developers who not only maintain compatibility with SBML, but also drive steady improvements to the Java interface and promote ease-of-use with end users.

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