Journal
BIOINFORMATICS
Volume 32, Issue 4, Pages 627-628Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btv636
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Funding
- FEDER through the Operational Programme for Competitiveness Factors [FCOMP-01-0124-FEDER-020733]
- project 'Biodiversity, Ecology and Global Change' - North Portugal Regional Operational Programme (ON.2), under the National Strategic Reference Framework
- National Funds through Foundation for Science and Technology [PTDC/MAR/118205/2010]
- FCT [SFRH/BPD/75851/2011, SFRH/BPD/40073/2007]
- Fundação para a Ciência e a Tecnologia [PTDC/MAR/118205/2010, SFRH/BPD/40073/2007] Funding Source: FCT
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Motivation: TCS is a widely used haplotype network reconstruction software, but lacks the capability of overlapping genetic with geographic structure, which is often a first step in phylogeographic analysis. Results: tcsBU is a web-based program that extends the capabilities of TCS, by implementing haplotype classification into an arbitrary user-defined scheme, which is displayed as pie-chart like graphs embedded into the network. Taking advantage of modern graphic libraries, tcsBU also improves the speed at which the final network layout is reached. Networks can be saved as a Scalable Vector Graphics format.
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