Related references
Note: Only part of the references are listed.Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis
Philipp Blohm et al.
NUCLEIC ACIDS RESEARCH (2014)
3did: a catalog of domain-based interactions of known three-dimensional structure
Roberto Mosca et al.
NUCLEIC ACIDS RESEARCH (2014)
Pfam: the protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2014)
Data, information, knowledge and principle: back to metabolism in KEGG
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2014)
Revealing Missing Parts of the Interactome via Link Prediction
Yuriy Hulovatyy et al.
PLOS ONE (2014)
Insights into polypharmacology from drug-domain associations
Aurelio A. Moya-Garcia et al.
BIOINFORMATICS (2013)
Interactome3D: adding structural details to protein networks
Roberto Mosca et al.
NATURE METHODS (2013)
The RCSB Protein Data Bank: new resources for research and education
Peter W. Rose et al.
NUCLEIC ACIDS RESEARCH (2013)
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
Andrea Franceschini et al.
NUCLEIC ACIDS RESEARCH (2013)
The Role of Structural Disorder in the Rewiring of Protein Interactions through Evolution
Roberto Mosca et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Cytoscape 2.8: new features for data integration and network visualization
Michael E. Smoot et al.
BIOINFORMATICS (2011)
Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams
Joan Segura et al.
BMC BIOINFORMATICS (2011)
Network target for screening synergistic drug combinations with application to traditional Chinese medicine
Shao Li et al.
BMC SYSTEMS BIOLOGY (2011)
DOMINE: a comprehensive collection of known and predicted domain-domain interactions
Sailu Yellaboina et al.
NUCLEIC ACIDS RESEARCH (2011)
Hidden Markov model speed heuristic and iterative HMM search procedure
L. Steven Johnson et al.
BMC BIOINFORMATICS (2010)
Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks
Mei Liu et al.
BIOINFORMATICS (2009)
Protein co-evolution, co-adaptation and interactions
Florencio Pazos et al.
EMBO JOURNAL (2008)
Phosphorylation of serine 68 in the IκB kinase (IKK)-binding domain of NEMO interferes with the structure of the IKK complex and tumor necrosis factor-α-induced NF-κB activity
Lysann Palkowitsch et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Methods for the detection and analysis of protein-protein interactions
Tord Berggard et al.
PROTEOMICS (2007)
Predicting protein domain interactions from coevolution of conserved regions
Maricel G. Kann et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions
Raja Jothi et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Choosing negative examples for the prediction of protein-protein interactions
A Ben-Hur et al.
BMC BIOINFORMATICS (2006)
Molecular linkage between the kinase ATM and NF-κB signaling in response to genotoxic stimuli (Publication with Expression of Concern. See vol. 371, pg. 1002, 2021)
ZH Wu et al.
SCIENCE (2006)
Evolutionary conservation of domain-domain interactions
Zohar Itzhaki et al.
GENOME BIOLOGY (2006)
Inferring protein-protein interactions through high-throughput interaction data from diverse organisms
Y Liu et al.
BIOINFORMATICS (2005)
Predicting protein function from sequence and structural data
JD Watson et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)
Multi-domain proteins in the three kingdoms of life:: Orphan domains and other unassigned regions
D Ekman et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Statistical analysis of domains in interacting protein pairs
TMW Nye et al.
BIOINFORMATICS (2005)
Inferring protein domain interactions from databases of interacting proteins
R Riley et al.
GENOME BIOLOGY (2005)
PDB file parser and structure class implemented in Python
T Hamelryck et al.
BIOINFORMATICS (2003)
Learning to predict protein-protein interactions from protein sequences
SM Gomez et al.
BIOINFORMATICS (2003)
Integrative approach for computationally inferring protein domain interactions
SK Ng et al.
BIOINFORMATICS (2003)
Assembly of cell regulatory systems through protein interaction domains
T Pawson et al.
SCIENCE (2003)
Assessing experimentally derived interactions in a small world
DS Goldberg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Inferring domain-domain interactions from protein-protein interactions
MH Deng et al.
GENOME RESEARCH (2002)
Hierarchical organization of modularity in metabolic networks
E Ravasz et al.
SCIENCE (2002)
Principles of docking: An overview of search algorithms and a guide to scoring functions
I Halperin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)
Correlated sequence-signatures as markers of protein-protein interaction
E Sprinzak et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
G Apic et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Inhibition of Akt and its anti-apoptotic activities by tumor necrosis factor-induced protein kinase C-related kinase 2 (PRK2) cleavage
H Koh et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Share Paper
