Related references
Note: Only part of the references are listed.Proton-pumping rhodopsins are abundantly expressed by microbial eukaryotes in a high-Arctic fjord
Anna Vader et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
Distribution and Diversity of Rhodopsin-Producing Microbes in the Chesapeake Bay
Julia A. Maresca et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
Metagenomic analysis reveals unusually high incidence of proteorhodopsin genes in the ultraoligotrophic Eastern Mediterranean Sea
Vadim Dubinsky et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters
David M. Needham et al.
ISME JOURNAL (2017)
Single-virus genomics reveals hidden cosmopolitan and abundant viruses
Francisco Martinez-Hernandez et al.
NATURE COMMUNICATIONS (2017)
Planktonic food web structure at a coastal time-series site: II. Spatiotemporal variability of microbial trophic activities
Paige E. Connell et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2017)
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
Alma E. Parada et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria
Laura Gomez-Consarnau et al.
ISME JOURNAL (2016)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters
Bjorn Brindefalk et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology
Jarone Pinhassi et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2016)
Summer Abundance and Distribution of Proteorhodopsin Genes in the Western Arctic Ocean
Dominique Boeuft et al.
FRONTIERS IN MICROBIOLOGY (2016)
Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom
David M. Needham et al.
NATURE MICROBIOLOGY (2016)
Bacterial reference genes for gene expression studies by RT-qPCR: survey and analysis
Danilo J. P. Rocha et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2015)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Marine diatom proteorhodopsins and their potential role in coping with low iron availability
Adrian Marchetti et al.
ISME JOURNAL (2015)
Winter diversity and expression of proteorhodopsin genes in a polar ocean
Dan Nguyen et al.
ISME JOURNAL (2015)
Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing
Anna Kopf et al.
MARINE GENOMICS (2015)
MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution
Dominique Boeuf et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2015)
Anvi'o: an advanced analysis and visualization platformfor 'omics data
A. Murat Eren et al.
PEERJ (2015)
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
Jacob A. Cram et al.
ISME JOURNAL (2015)
Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses
Sonja Voget et al.
ISME JOURNAL (2015)
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Jiajie Zhang et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks
Pelin Yilmaz et al.
NUCLEIC ACIDS RESEARCH (2014)
Microspatial gene expression patterns in the Amazon River Plume
Brandon M. Satinsky et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages
Elizabeth A. Ottesen et al.
SCIENCE (2014)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean
Dominique Boeuf et al.
FEMS MICROBIOLOGY ECOLOGY (2013)
Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre
Paola R. Gomez-Pereira et al.
ISME JOURNAL (2013)
Light-stimulated growth of proteorhodopsin-bearing sea-ice psychrophile Psychroflexus torquis is salinity dependent
Shi Feng et al.
ISME JOURNAL (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Bacterial, archaeal and viral-like rhodopsins from the Red Sea
Alon Philosof et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes
J. Cesar Ignacio-Espinoza et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability
Adrian Marchetti et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
Yanmei Shi et al.
ISME JOURNAL (2011)
Energy Starved Candidatus Pelagibacter Ubique Substitutes Light-Mediated ATP Production for Endogenous Carbon Respiration
Laura Steindler et al.
PLOS ONE (2011)
Constitutive Expression of the Proteorhodopsin Gene by a Flavobacterium Strain Representative of the Proteorhodopsin-Producing Microbial Community in the North Sea
Thomas Riedel et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Frederick A. Matsen et al.
BMC BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Hidden Markov model speed heuristic and iterative HMM search procedure
L. Steven Johnson et al.
BMC BIOINFORMATICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation
Laura Gomez-Consarnau et al.
PLOS BIOLOGY (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
Rachel S. Poretsky et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Opinion - Proteorhodopsins: an array of physiological roles?
Jed A. Fuhrman et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Microbial community gene expression in ocean surface waters
Jorge. Frias-Lopez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas
Gazalah Sabehi et al.
ISME JOURNAL (2007)
Minimus: a fast, lightweight genome assembler
Daniel D. Sommer et al.
BMC BIOINFORMATICS (2007)
Light-powering Escherichia coli with proteorhodopsin
Jessica M. Walter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
Laura Gomez-Consarnau et al.
NATURE (2007)
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
Douglas B. Rusch et al.
PLOS BIOLOGY (2007)
Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I
Anand Patel et al.
NATURE PROTOCOLS (2007)
Genome sequencing in microfabricated high-density picolitre reactors
M Margulies et al.
NATURE (2005)
Genome streamlining in a cosmopolitan oceanic bacterium
SJ Giovannoni et al.
SCIENCE (2005)
Different SAR86 subgroups harbour divergent proteorhodopsins
G Sabehi et al.
ENVIRONMENTAL MICROBIOLOGY (2004)
Diversification and spectral tuning in marine proteorhodopsins
DL Man et al.
EMBO JOURNAL (2003)
Isolation and characterization of Erythrobacter sp strains from the upper ocean
M Koblizek et al.
ARCHIVES OF MICROBIOLOGY (2003)
Proteorhodopsin phototrophy in the ocean
O Béjà et al.
NATURE (2001)
Bacterial rhodopsin:: Evidence for a new type of phototrophy in the sea
O Béjà et al.
SCIENCE (2000)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)
Share Paper
