Related references
Note: Only part of the references are listed.Resolving systematic errors in widely used enhancer activity assays in human cells
Felix Muerdter et al.
NATURE METHODS (2018)
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Aziz Khan et al.
NUCLEIC ACIDS RESEARCH (2018)
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin et al.
SCIENCE (2017)
A screening system to identify transcription factors that induce binding site-directed DNA demethylation
Takahiro Suzuki et al.
EPIGENETICS & CHROMATIN (2017)
Measuring quantitative effects of methylation on transcription factor-DNA binding affinity
Zheng Zuo et al.
SCIENCE ADVANCES (2017)
PANTHER version 10: expanded protein families and functions, and analysis tools
Huaiyu Mi et al.
NUCLEIC ACIDS RESEARCH (2016)
Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay
Ryan Tewhey et al.
CELL (2016)
Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome
Christopher M. Vockley et al.
CELL (2016)
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
Ronan C. O'Malley et al.
CELL (2016)
Editing DNA Methylation in the Mammalian Genome
X. Shawn Liu et al.
CELL (2016)
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic
Annelien Verfaillie et al.
GENOME RESEARCH (2016)
Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus)
Amanda J. Lea et al.
MOLECULAR ECOLOGY (2016)
Transcription factors as readers and effectors of DNA methylation
Heng Zhu et al.
NATURE REVIEWS GENETICS (2016)
Differential sensitivity to methylated DNA by ETS-family transcription factors is intrinsically encoded in their DNA-binding domains
Dominique C. Stephens et al.
NUCLEIC ACIDS RESEARCH (2016)
Repurposing the CRISPR-Cas9 system for targeted DNA methylation
Aleksandar Vojta et al.
NUCLEIC ACIDS RESEARCH (2016)
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
Alain Pacis et al.
GENOME RESEARCH (2015)
Massively parallel quantification of the regulatory effects of noncoding genetic variation in a human cohort
Christopher M. Vockley et al.
GENOME RESEARCH (2015)
Structures of the Ets Protein DNA-binding Domains of Transcription Factors Etv1, Etv4, Etv5, and Fev DETERMINANTS OF DNA BINDING AND REDOX REGULATION BY DISULFIDE BOND FORMATION
Christopher D. O. Cooper et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
TALE-mediated epigenetic suppression of CDKN2A increases replication in human
Diana L. Bernstein et al.
JOURNAL OF CLINICAL INVESTIGATION (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Function and information content of DNA methylation
Dirk Schuebeler
NATURE (2015)
Competition between DNA methylation and transcription factors determines binding of NRF1
Silvia Domcke et al.
NATURE (2015)
High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq
Laurent Vanhille et al.
NATURE COMMUNICATIONS (2015)
DNA Methylation: Insights into Human Evolution
Irene Hernando-Herraez et al.
PLOS GENETICS (2015)
DNA methylation age of blood predicts all-cause mortality in later life
Riccardo E. Marioni et al.
GENOME BIOLOGY (2015)
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation
Muhammad A. Zabidi et al.
NATURE (2015)
Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution
Cosmas D. Arnold et al.
NATURE GENETICS (2014)
Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci
Philip L. De Jager et al.
NATURE NEUROSCIENCE (2014)
The UCSC Genome Browser database: 2014 update
Donna Karolchik et al.
NUCLEIC ACIDS RESEARCH (2014)
Age-related variations in the methylome associated with gene expression in human monocytes and T cells
Lindsay M. Reynolds et al.
NATURE COMMUNICATIONS (2014)
DNA methylation signatures link prenatal famine exposure to growth and metabolism
Elmar W. Tobi et al.
NATURE COMMUNICATIONS (2014)
Maternal nutrition at conception modulates DNA methylation of human metastable epialleles
Paula Dominguez-Salas et al.
NATURE COMMUNICATIONS (2014)
Genome-Wide DNA Methylation Analysis of Human Pancreatic Islets from Type 2 Diabetic and Non-Diabetic Donors Identifies Candidate Genes That Influence Insulin Secretion
Tasnim Dayeh et al.
PLOS GENETICS (2014)
Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels
Nicholas E. Banovich et al.
PLOS GENETICS (2014)
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
Charity W. Law et al.
GENOME BIOLOGY (2014)
CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo
Ishminder K. Mann et al.
GENOME RESEARCH (2013)
Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins
Morgan L. Maeder et al.
NATURE BIOTECHNOLOGY (2013)
DNA methylation: roles in mammalian development
Zachary D. Smith et al.
NATURE REVIEWS GENETICS (2013)
Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
Cosmas D. Arnold et al.
SCIENCE (2013)
Dynamics of DNA Methylation in Recent Human and Great Ape Evolution
Irene Hernando-Herraez et al.
PLOS GENETICS (2013)
DNA methylation presents distinct binding sites for human transcription factors
Shaohui Hu et al.
ELIFE (2013)
Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape
Kenneth Day et al.
GENOME BIOLOGY (2013)
DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes
Dvir Aran et al.
GENOME BIOLOGY (2013)
Acute Exercise Remodels Promoter Methylation in Human Skeletal Muscle
Romain Barres et al.
CELL METABOLISM (2012)
Epigenetic reprogramming of cancer cells via targeted DNA methylation
Ashley G. Rivenbark et al.
EPIGENETICS (2012)
Genome-scale analysis of aberrant DNA methylation in colorectal cancer
Toshinori Hinoue et al.
GENOME RESEARCH (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
Alexandre Melnikov et al.
NATURE BIOTECHNOLOGY (2012)
Massively parallel functional dissection of mammalian enhancers in vivo
Rupali P. Patwardhan et al.
NATURE BIOTECHNOLOGY (2012)
DNA methylation profiling in the clinic: applications and challenges
Holger Heyn et al.
NATURE REVIEWS GENETICS (2012)
Epigenetics and the environment: emerging patterns and implications
Robert Feil et al.
NATURE REVIEWS GENETICS (2012)
Factors underlying variable DNA methylation in a human community cohort
Lucia L. Lam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The aging epigenome: DNA methylation from the cradle to the grave
Marc Winnefeld et al.
GENOME BIOLOGY (2012)
Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling
Patrick Boyle et al.
GENOME BIOLOGY (2012)
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
Claude Becker et al.
NATURE (2011)
Increased methylation variation in epigenetic domains across cancer types
Kasper Daniel Hansen et al.
NATURE GENETICS (2011)
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
Hongcang Gu et al.
NATURE PROTOCOLS (2011)
Epigenetics and the Environmental Regulation of the Genome and Its Function
Tie-Yuan Zhang et al.
ANNUAL REVIEW OF PSYCHOLOGY (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
Pan Du et al.
BMC BIOINFORMATICS (2010)
Methylation matters: binding of Ets-1 to the demethylated Foxp3 gene contributes to the stabilization of Foxp3 expression in regulatory T cells
Julia K. Polansky et al.
JOURNAL OF MOLECULAR MEDICINE-JMM (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BSMAP: whole genome bisulfite sequence MAPping program
Yuanxin Li et al.
BMC BIOINFORMATICS (2009)
Genome-scale DNA methylation maps of pluripotent and differentiated cells
Alexander Meissner et al.
NATURE (2008)
Environmental epigenomics and disease susceptibility
Randy L. Jirtle et al.
NATURE REVIEWS GENETICS (2007)
Functional Analysis of Promoter CpG Methylation Using a CpG-Free Luciferase Reporter Vector
Maja Klug et al.
EPIGENETICS (2006)
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
A Siepel et al.
GENOME RESEARCH (2005)
5-Azacytidine and 5-aza-2′-deoxycytidine as inhibitors of DNA methylation:: mechanistic studies and their implications for cancer therapy
JK Christman
ONCOGENE (2002)