4.6 Article

Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods

Related references

Note: Only part of the references are listed.
Article Endocrinology & Metabolism

Glucose Is Involved in the Dynamic Regulation of m6A in Patients With Type 2 Diabetes

Ying Yang et al.

JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM (2019)

Article Biochemistry & Molecular Biology

MeT-DB V2.0: elucidating context-specific functions of N-6-methyl-adenosine methyltranscriptome

Hui Liu et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biology

m6ASNP: a tool for annotating genetic variants by m6A function

Shuai Jiang et al.

GIGASCIENCE (2018)

Letter Biochemistry & Molecular Biology

MethyRNA: a web server for identification of N6-methyladenosine sites

Wei Chen et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2017)

Editorial Material Genetics & Heredity

Emerging links between m6A and misregulated mRNA methylation in cancer

Samie R. Jaffrey et al.

GENOME MEDICINE (2017)

Article Multidisciplinary Sciences

Detecting N6-methyladenosine sites from RNA transcriptomes using ensemble Support Vector Machines

Wei Chen et al.

SCIENTIFIC REPORTS (2017)

Article Biochemical Research Methods

pRNAm-PC: Predicting N6-methyladenosine sites in RNA sequences via physical-chemical properties

Zi Liu et al.

ANALYTICAL BIOCHEMISTRY (2016)

Article Biochemical Research Methods

A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data

Xiaodong Cui et al.

BIOINFORMATICS (2016)

Article Biochemical Research Methods

Gene expression inference with deep learning

Yifei Chen et al.

BIOINFORMATICS (2016)

Article Microbiology

Dynamics of Human and Viral RNA Methylation during Zika Virus Infection

Gianluigi Lichinchi et al.

CELL HOST & MICROBE (2016)

Article Microbiology

Posttranscriptional m6A Editing of HIV-1 mRNAs Enhances Viral Gene Expression

Edward M. Kennedy et al.

CELL HOST & MICROBE (2016)

Article Biochemistry & Molecular Biology

AthMethPre: a web server for the prediction and query of mRNA m(6)A sites in Arabidopsis thaliana

Shunian Xiang et al.

MOLECULAR BIOSYSTEMS (2016)

Article Biochemistry & Molecular Biology

The m6A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells

Shuibin Lin et al.

MOLECULAR CELL (2016)

Article Biochemistry & Molecular Biology

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features

Yuan Zhou et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

RNAMethPre: A Web Server for the Prediction and Query of mRNA m6A Sites

Shunian Xiang et al.

PLOS ONE (2016)

Article Multidisciplinary Sciences

Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m6A-demethylation of NANOG mRNA

Chuanzhao Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemical Research Methods

m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks

Song-Yao Zhang et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Biochemical Research Methods

iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition

Wei Chen et al.

ANALYTICAL BIOCHEMISTRY (2015)

Article Biochemistry & Molecular Biology

N6-methyladenosine Modulates Messenger RNA Translation Efficiency

Xiao Wang et al.

Article Biochemical Research Methods

Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome

Bastian Linder et al.

NATURE METHODS (2015)

Article Medical Laboratory Technology

RNA epigenetics

Nian Liu et al.

TRANSLATIONAL RESEARCH (2015)

Article Mathematical & Computational Biology

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

Janet Pinero et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2015)

Article Biochemical Research Methods

DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

Guangchuang Yu et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Exome-based analysis for RNA epigenome sequencing data

Jia Meng et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock

Jean-Michel Fustin et al.

Article Biochemistry & Molecular Biology

ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility

Guanqun Zheng et al.

MOLECULAR CELL (2013)

Article Biochemical Research Methods

Interpretation of Genomic Variants Using a Unified Biological Network Approach

Ekta Khurana et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Mathematical & Computational Biology

HINT: High-quality protein interactomes and their applications in understanding human disease

Jishnu Das et al.

BMC SYSTEMS BIOLOGY (2012)

Article Multidisciplinary Sciences

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

Dan Dominissini et al.

NATURE (2012)

Article Biochemical Research Methods

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell et al.

NATURE PROTOCOLS (2012)

Article Biochemistry & Molecular Biology

Disease Ontology: a backbone for disease semantic integration

Lynn Marie Schriml et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Genetics & Heredity

The role of the fat mass and obesity associated gene (FTO) in breast cancer risk

Virginia Kaklamani et al.

BMC MEDICAL GENETICS (2011)

Article Biochemical Research Methods

Next-generation sequencing to generate interactome datasets

Haiyuan Yu et al.

NATURE METHODS (2011)

Article Biochemical Research Methods

Genome-wide inferring gene-phenotype relationship by walking on the heterogeneous network

Yongjin Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

iRefIndex: A consolidated protein interaction database with provenance

Sabry Razick et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Post-transcriptional regulation of neuro-oncological ventral antigen 1 by the neuronal RNA-binding proteins ELAV

Antonia Ratti et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Review Biochemistry & Molecular Biology

Hypoxia-inducible factors, stem cells, and cancer

Brian Keith et al.

Article Geriatrics & Gerontology

A polymorphism of the YTHDF2 gene (1p35) located in an Alu-rich genomic domain is associated with human longevity

Maurizio Cardelli et al.

JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES (2006)

Article Multidisciplinary Sciences

Wnt signalling in stem cells and cancer

T Reya et al.

NATURE (2005)

Article Biotechnology & Applied Microbiology

DAVID: Database for annotation, visualization, and integrated discovery

G Dennis et al.

GENOME BIOLOGY (2003)

Review Biochemistry & Molecular Biology

Linking colorectal cancer to Wnt signaling

M Bienz et al.