Related references
Note: Only part of the references are listed.iDNA6mA-PseKNC: Identifying DNA N-6-methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC
Pengmian Feng et al.
GENOMICS (2019)
OPAL: prediction of MoRF regions in intrinsically disordered protein sequences
Ronesh Sharma et al.
BIOINFORMATICS (2018)
Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction
Yosvany Lopez et al.
BMC GENOMICS (2018)
PTM-ssMP: A Web Server for Predicting Different Types of Post-translational Modification Sites Using Novel Site-specific Modification Profile
Yu Liu et al.
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES (2018)
EvoStruct-Sub: An accurate Gram-positive protein subcellular localization predictor using evolutionary and structural features
Md. Raihan Uddin et al.
JOURNAL OF THEORETICAL BIOLOGY (2018)
PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework
Jiangning Song et al.
JOURNAL OF THEORETICAL BIOLOGY (2018)
Improving succinylation prediction accuracy by incorporating the secondary structure via helix, strand and coil, and evolutionary information from profile bigrams
Abdollah Dehzangi et al.
PLOS ONE (2018)
A Novel Modeling in Mathematical Biology for Classification of Signal Peptides
Asma Ehsan et al.
SCIENTIFIC REPORTS (2018)
iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC
Bin Liu et al.
BIOINFORMATICS (2018)
iRSpot-EL: identify recombination spots with an ensemble learning approach
Bin Liu et al.
BIOINFORMATICS (2017)
Prediction of lysine propionylation sites using biased SVM and incorporating four different sequence features into Chou's PseAAC
Zhe Ju et al.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2017)
A novel alignment-free method to classify protein folding types by combining spectral graph clustering with Chou's pseudo amino acid composition
Pooja Tripathi et al.
JOURNAL OF THEORETICAL BIOLOGY (2017)
Unb-DPC: Identify mycobacterial membrane protein types by incorporating un-biased dipeptide composition into Chou's general PseAAC
Muslim Khan et al.
JOURNAL OF THEORETICAL BIOLOGY (2017)
iPHLoc-ES: Identification of bacteriophage protein locations using evolutionary and structural features
Swakkhar Shatabda et al.
JOURNAL OF THEORETICAL BIOLOGY (2017)
PSSM-Suc: Accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction
Abdollah Dehzangi et al.
JOURNAL OF THEORETICAL BIOLOGY (2017)
Predicting protein lysine phosphoglycerylation sites by hybridizing many sequence based features
Qing-Yun Chen et al.
MOLECULAR BIOSYSTEMS (2017)
2L-piRNA: A Two-Layer Ensemble Classifier for Identifying Piwi-Interacting RNAs and Their Function
Bin Liu et al.
MOLECULAR THERAPY-NUCLEIC ACIDS (2017)
Prediction of post-translational modification sites using multiple kernel support vector machine
BingHua Wang et al.
PEERJ (2017)
An Unprecedented Revolution in Medicinal Chemistry Driven by the Progress of Biological Science
Kuo-Chen Chou
CURRENT TOPICS IN MEDICINAL CHEMISTRY (2017)
Prediction of Lysine Malonylation Sites Based on Pseudo Amino Acid
Qilin Xiang et al.
COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2017)
pLoc-mAnimal: predict subcellular localization of animal proteins with both single and multiple sites
Xiang Cheng et al.
BIOINFORMATICS (2017)
SucStruct: Prediction of succinylated lysine residues by using structural properties of amino acids
Yosvany Lopez et al.
ANALYTICAL BIOCHEMISTRY (2017)
Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins
Rhys Heffernan et al.
BIOINFORMATICS (2016)
iRSpot-GAEnsC: identifing recombination spots via ensemble classifier and extending the concept of Chou's PseAAC to formulate DNA samples
Muhammad Kabir et al.
MOLECULAR GENETICS AND GENOMICS (2016)
Predicting pupylation sites in prokaryotic proteins using semi-supervised self-training support vector machine algorithm
Zhe Ju et al.
ANALYTICAL BIOCHEMISTRY (2016)
iSuc-PseOpt: Identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset
Jianhua Jia et al.
ANALYTICAL BIOCHEMISTRY (2016)
pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC
Jianhua Jia et al.
BIOINFORMATICS (2016)
3D structure determination of a protein in living cells using paramagnetic NMR spectroscopy
Bin-Bin Pan et al.
CHEMICAL COMMUNICATIONS (2016)
Sequence-Based Prediction of Protein-Carbohydrate Binding Sites Using Support Vector Machines
Ghazaleh Taherzadeh et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2016)
Sequence-Based Prediction of Protein-Peptide Binding Sites Using Support Vector Machine
Ghazaleh Taherzadeh et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2016)
Post-translational modifications in rheumatoid arthritis and atherosclerosis: Focus on citrullination and carbamylation
Francesca Romana Spinelli et al.
JOURNAL OF INTERNATIONAL MEDICAL RESEARCH (2016)
Prediction of Protein Lysine Acylation by Integrating Primary Sequence Information with Multiple Functional Features
Yipeng Du et al.
JOURNAL OF PROTEOME RESEARCH (2016)
Predicting lysine phosphoglycerylation with fuzzy SVM by incorporating k-spaced amino acid pairs into Chou's general PseAAC
Zhe Ju et al.
JOURNAL OF THEORETICAL BIOLOGY (2016)
iPPBS-Opt: A Sequence-Based Ensemble Classifier for Identifying Protein-Protein Binding Sites by Optimizing Imbalanced Training Datasets
Jianhua Jia et al.
MOLECULES (2016)
ASAP: a machine learning framework for local protein properties
Nadav Brandes et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition
Zi Liu et al.
ANALYTICAL BIOCHEMISTRY (2015)
iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach
Xuan Xiao et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2015)
Phogly-PseAAC: Prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity
Yan Xu et al.
JOURNAL OF THEORETICAL BIOLOGY (2015)
Impacts of Bioinformatics to Medicinal Chemistry
Kuo-Chen Chou
MEDICINAL CHEMISTRY (2015)
Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning
Rhys Heffernan et al.
SCIENTIFIC REPORTS (2015)
iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model
Wang-Ren Qiu et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2015)
Prediction of protein kinase-specific phosphorylation sites in hierarchical structure using functional information and random forest
Wenwen Fan et al.
AMINO ACIDS (2014)
Enrichment and separation techniques for large-scale proteomics analysis of the protein post-translational modifications
Junfeng Huang et al.
JOURNAL OF CHROMATOGRAPHY A (2014)
Predicting Backbone Cα Angles and Dihedrals from Protein Sequences by Stacked Sparse Auto-Encoder Deep Neural Network
James Lyons et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2014)
Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology
Mohammad Reza Bakhtiarizadeh et al.
JOURNAL OF THEORETICAL BIOLOGY (2014)
The functional diversity of protein lysine methylation
Sylvain Lanouette et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
CPLM: a database of protein lysine modifications
Zexian Liu et al.
NUCLEIC ACIDS RESEARCH (2014)
LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers
Ting Hou et al.
PLOS ONE (2014)
Discriminating between Lysine Sumoylation and Lysine Acetylation Using mRMR Feature Selection and Analysis
Ning Zhang et al.
PLOS ONE (2014)
A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition
Alok Sharma et al.
BMC BIOINFORMATICS (2013)
SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways
Jeongsoon Park et al.
MOLECULAR CELL (2013)
Functional Lysine Modification by an Intrinsically Reactive Primary Glycolytic Metabolite
Raymond E. Moellering et al.
SCIENCE (2013)
Functional decorations: post-translational modifications and heart disease delineated by targeted proteomics
Kiersten A. Liddy et al.
GENOME MEDICINE (2013)
Disorders of glucose metabolism and insulin resistance in patients with obstructive sleep apnoea syndrome
E. Bulcun et al.
INTERNATIONAL JOURNAL OF CLINICAL PRACTICE (2012)
A Classification of Bioinformatics Algorithms from the Viewpoint of Maximizing Expected Accuracy (MEA)
Michiaki Hamada et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles
Eshel Faraggi et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2012)
Prediction of Protein Domain with mRMR Feature Selection and Analysis
Bi-Qing Li et al.
PLOS ONE (2012)
Prediction of Protein Cleavage Site with Feature Selection by Random Forest
Bi-Qing Li et al.
PLOS ONE (2012)
Glucose metabolism and cardiac hypertrophy
Stephen C. Kolwicz et al.
CARDIOVASCULAR RESEARCH (2011)
Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification
Minjia Tan et al.
CELL (2011)
Some remarks on protein attribute prediction and pseudo amino acid composition
Kuo-Chen Chou
JOURNAL OF THEORETICAL BIOLOGY (2011)
Molecular Characterization of Propionyllysines in Non-histone Proteins
Zhongyi Cheng et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
Chunaram Choudhary et al.
SCIENCE (2009)
Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction
Eshel Faraggi et al.
STRUCTURE (2009)
Real-value prediction of backbone torsion angles
Bin Xue et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Recent progress in protein subcellular location prediction
Kuo-Chen Chou et al.
ANALYTICAL BIOCHEMISTRY (2007)
Real-SPINE: An integrated system of neural networks for real-value prediction of protein structural properties
Ofer Dor et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Analysis and prediction of mammalian protein glycation
Morten Bo Johansen et al.
GLYCOBIOLOGY (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Analysis of accessible surface of residues in proteins
L Lins et al.
PROTEIN SCIENCE (2003)
Prediction of protein cellular attributes using pseudo-amino acid composition
KC Chou
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2001)
The PSIPRED protein structure prediction server
LJ McGuffin et al.
BIOINFORMATICS (2000)