4.7 Article

Breaking the curse of dimensionality to identify causal variants in Breeding 4

Journal

THEORETICAL AND APPLIED GENETICS
Volume 132, Issue 3, Pages 559-567

Publisher

SPRINGER
DOI: 10.1007/s00122-018-3267-3

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Funding

  1. USDA-ARS
  2. National Science Foundation [1238014]
  3. ARPA-E (Advanced Research Projects Agency-Energy) within the US Department of Energy
  4. US Agency for International Development (USAID)
  5. US Agency for International Development (USAID) [AID-OAA-A-13-00047]

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In the past, plant breeding has undergone three major transformations and is currently transitioning to a new technological phase, Breeding 4. This phase is characterized by the development of methods for biological design of plant varieties, including transformation and gene editing techniques directed toward causal loci. The application of such technologies will require to reliably estimate the effect of loci in plant genomes by avoiding the situation where the number of loci assayed (p) surpasses the number of plant genotypes (n). Here, we discuss approaches to avoid this curse of dimensionality (n<

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