4.8 Article

Genomes OnLine database (GOLD) v.7: updates and new features

Journal

NUCLEIC ACIDS RESEARCH
Volume 47, Issue D1, Pages D649-D659

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/nar/gky977

Keywords

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Funding

  1. U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility [DE-AC02-05CH11231]
  2. Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]

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The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49826 Biosamples, 313324 Organisms, 215881 Sequencing Projects and 174454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years.

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