4.7 Article

Efficient and robust proteome-wide approaches for cross-linking mass spectrometry

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei

Domenico Fasci et al.

MOLECULAR & CELLULAR PROTEOMICS (2018)

Article Biochemistry & Molecular Biology

The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress

Xiaorong Wang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2017)

Article Cell Biology

Structure of the RZZ complex and molecular basis of its interaction with Spindly

Shyamal Mosalaganti et al.

JOURNAL OF CELL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Spatial Organization and Molecular Interactions of the Schizosaccharomyces pombe Ccq1-Tpz1-Poz1 Shelterin Complex

Harry Scott et al.

JOURNAL OF MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes

G. C. P. van Zundert et al.

JOURNAL OF MOLECULAR BIOLOGY (2017)

Article Biochemical Research Methods

In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level

Luitzen de Jong et al.

JOURNAL OF PROTEOME RESEARCH (2017)

Article Biochemical Research Methods

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome

Xiaorong Wang et al.

MOLECULAR & CELLULAR PROTEOMICS (2017)

Article Biochemistry & Molecular Biology

Crystal structure of the N-terminal domain of human Timeless and its interaction with Tipin

Sandro Holzer et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry

Devin K. Schweppe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Mechanisms for restraining cAMP-dependent protein kinase revealed by subunit quantitation and cross-linking approaches

Ryan Walker-Gray et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state

Joost Snijder et al.

SCIENCE (2017)

Article Chemistry, Multidisciplinary

The First Zero-Length Mass Spectrometry-Cleavable Cross-Linker for Protein Structure Analysis

Christoph Hage et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2017)

Article Biochemistry & Molecular Biology

Structural and Functional Analysis of a β2-Adrenergic Receptor Complex with GRK5

Konstantin E. Komolov et al.

Article Biochemistry & Molecular Biology

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform

Javier Fernandez-Martinez et al.

Article Biochemistry & Molecular Biology

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

G. C. P. van Zundert et al.

JOURNAL OF MOLECULAR BIOLOGY (2016)

Article Biochemical Research Methods

Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant

Zhuo A. Chen et al.

MOLECULAR & CELLULAR PROTEOMICS (2016)

Article Biochemical Research Methods

Automated structure modeling of large protein assemblies using crosslinks as distance restraints

Mathias Ferber et al.

NATURE METHODS (2016)

Article Biochemical Research Methods

Six alternative proteases for mass spectrometry-based proteomics beyond trypsin

Piero Giansanti et al.

NATURE PROTOCOLS (2016)

Article Biochemistry & Molecular Biology

Molecular architecture of the Dam1 complex-microtubule interaction

Thibault Legal et al.

OPEN BIOLOGY (2016)

Article Biochemical Research Methods

DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes

G. C. P. van Zundert et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1

Evelyn Rampler et al.

JOURNAL OF PROTEOME RESEARCH (2015)

Article Biochemical Research Methods

xiNET: Cross-link Network Maps With Residue Resolution

Colin W. Combe et al.

MOLECULAR & CELLULAR PROTEOMICS (2015)

Article Multidisciplinary Sciences

Architecture of the RNA polymerase II-Mediator core initiation complex

C. Plaschka et al.

NATURE (2015)

Article Biochemical Research Methods

Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry

Fan Liu et al.

NATURE METHODS (2015)

Letter Biochemical Research Methods

The I-TASSER Suite: protein structure and function prediction

Jianyi Yang et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

Quantitative interactome analysis reveals a chemoresistant edgotype

Juan D. Chavez et al.

NATURE COMMUNICATIONS (2015)

Article Biochemical Research Methods

Automated Assignment of MS/MS Cleavable Cross-Links in Protein 3D-Structure Analysis

Michael Goetze et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2015)

Article Biochemical Research Methods

A Proteomic Ruler for Protein Copy Number and Concentration Estimation without Spike-in Standards

Jacek R. Wisniewski et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemical Research Methods

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

Juergen Cox et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemistry & Molecular Biology

Structural Model of a CRISPR RNA-Silencing Complex Reveals the RNA-Target Cleavage Activity in Cmr4

Christian Benda et al.

MOLECULAR CELL (2014)

Article Biochemical Research Methods

In Vivo Protein Interaction Network Identified with a Novel Real-Time Cross-Linked Peptide Identification Strategy

Chad R. Weisbrod et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Article Biochemical Research Methods

Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers

Lutz Fischer et al.

JOURNAL OF PROTEOMICS (2013)

Article Biochemical Research Methods

Large-scale identification of ubiquitination sites by mass spectrometry

Namrata D. Udeshi et al.

NATURE PROTOCOLS (2013)

Article Multidisciplinary Sciences

Cross-Link Guided Molecular Modeling with ROSETTA

Abdullah Kahraman et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation

Carla Schmidt et al.

NATURE COMMUNICATIONS (2013)

Article Biochemical Research Methods

Expanding the Chemical Cross-Linking Toolbox by the Use of Multiple Proteases and Enrichment by Size Exclusion Chromatography

Alexander Leitner et al.

MOLECULAR & CELLULAR PROTEOMICS (2012)

Article Biochemical Research Methods

Identification of cross-linked peptides from complex samples

Bing Yang et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

I-TASSER: a unified platform for automated protein structure and function prediction

Ambrish Roy et al.

NATURE PROTOCOLS (2010)

Article Biochemical Research Methods

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

Judit Villen et al.

NATURE PROTOCOLS (2008)

Article Biochemical Research Methods

Integration of biological networks and gene expression data using Cytoscape

Melissa S. Cline et al.

NATURE PROTOCOLS (2007)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Biochemical Research Methods

MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides

B Schilling et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2003)

Article Chemistry, Multidisciplinary

HADDOCK: A protein-protein docking approach based on biochemical or biophysical information

C Dominguez et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)