Journal
JOURNAL OF VIROLOGY
Volume 93, Issue 1, Pages -Publisher
AMER SOC MICROBIOLOGY
DOI: 10.1128/JVI.01342-18
Keywords
PacBio; RNA sequencing; minION; nanopore sequencing; next-generation sequencing; single-cell RNA-seq; transcriptome; virus
Categories
Funding
- NIH [AI073898, GM05692, AI130618]
- NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES [R01AI073898] Funding Source: NIH RePORTER
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Transcriptome profiling has become routine in studies of many biological processes. However, the favored approaches such as short-read Illumina RNA sequencing are giving way to long-read sequencing platforms better suited to interrogating the complex transcriptomes typical of many RNA and DNA viruses. Here, we provide a guide-tailored to molecular virologists-to the ins and outs of viral transcriptome sequencing and discuss the strengths and weaknesses of the major RNA sequencing technologies as tools to analyze the abundance and diversity of the viral transcripts made during infection.
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