Related references
Note: Only part of the references are listed.The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program
Vincent Lefort et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
Ge Tan et al.
SYSTEMATIC BIOLOGY (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks
Pelin Yilmaz et al.
NUCLEIC ACIDS RESEARCH (2014)
Surprising results on phylogenetic tree building methods based on molecular sequences
Gaston H. Gonnet
BMC BIOINFORMATICS (2012)
ALF-A Simulation Framework for Genome Evolution
Daniel A. Dalquen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Botond Sipos et al.
BMC BIOINFORMATICS (2011)
TNT, a free program for phylogenetic analysis
Pablo A. Goloboff et al.
CLADISTICS (2008)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
HA Schmidt et al.
BIOINFORMATICS (2002)
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
S Whelan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used
K Takahashi et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)