4.6 Review

Genetic anchoring of whole-genorne shotgun assemblies

Related references

Note: Only part of the references are listed.
Review Plant Sciences

Structural variation and genome complexity: is dispensable really dispensable?

Fabio Marroni et al.

CURRENT OPINION IN PLANT BIOLOGY (2014)

Editorial Material Biochemistry & Molecular Biology

Recent novel approaches for population genomics data analysis

Kimberly R. Andrews et al.

MOLECULAR ECOLOGY (2014)

Review Ecology

Genome sequencing and population genomics in non-model organisms

Hans Ellegren

TRENDS IN ECOLOGY & EVOLUTION (2014)

Article Genetics & Heredity

Sequencing, Assembling, and Correcting Draft Genomes Using Recombinant Populations

Matthew W. Hahn et al.

G3-GENES GENOMES GENETICS (2014)

Article Multidisciplinary Sciences

The Norway spruce genome sequence and conifer genome evolution

Bjorn Nystedt et al.

NATURE (2013)

Article Multidisciplinary Sciences

Draft genome of the wheat A-genome progenitor Triticum urartu

Hong-Qing Ling et al.

NATURE (2013)

Article Multidisciplinary Sciences

The zebrafish reference genome sequence and its relationship to the human genome

Kerstin Howe et al.

NATURE (2013)

Article Biotechnology & Applied Microbiology

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

Yang Dong et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

Joshua N. Burton et al.

NATURE BIOTECHNOLOGY (2013)

Review Genetics & Heredity

Understanding the origin of species with genome-scale data: modelling gene flow

Vitor Sousa et al.

NATURE REVIEWS GENETICS (2013)

Article Plant Sciences

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

Martin Mascher et al.

PLANT JOURNAL (2013)

Article Multidisciplinary Sciences

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

Geoffrey P. Morris et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences

Zhen-Yu Gao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence

Kelly Houston et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

The Amborella Genome and the Evolution of Flowering Plants

Victor A. Albert et al.

SCIENCE (2013)

Article Biotechnology & Applied Microbiology

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

Maria Munoz-Amatriain et al.

GENOME BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Mutation mapping and identification by whole-genome sequencing

Ignaty Leshchiner et al.

GENOME RESEARCH (2012)

Review Biotechnology & Applied Microbiology

Advances in BAC-Based Physical Mapping and Map Integration Strategies in Plants

Ruvini Ariyadasa et al.

JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY (2012)

Article Multidisciplinary Sciences

The genomic landscape of species divergence in Ficedula flycatchers

Hans Ellegren et al.

NATURE (2012)

Article Multidisciplinary Sciences

A physical, genetic and functional sequence assembly of the barley genome

Klaus F. X. Mayer et al.

NATURE (2012)

Article Multidisciplinary Sciences

Analyses of pig genomes provide insight into porcine demography and evolution

Martien A. M. Groenen et al.

NATURE (2012)

Article Multidisciplinary Sciences

Analysis of the breadwheat genome using whole-genome shotgun sequencing

Rachel Brenchley et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated map of genetic variation from 1,092 human genomes

David M. Altshuler et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Genome sequencing reveals agronomically important loci in rice using MutMap

Akira Abe et al.

NATURE BIOTECHNOLOGY (2012)

Article Multidisciplinary Sciences

Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

Jacob A. Tennessen et al.

SCIENCE (2012)

Article Biochemical Research Methods

Estimation of allele frequency and association mapping using next-generation sequencing data

Su Yeon Kim et al.

BMC BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Sequence-based physical mapping of complex genomes by whole genome profiling

Jan van Oeveren et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

Peter Andolfatto et al.

GENOME RESEARCH (2011)

Article Genetics & Heredity

The genome of woodland strawberry (Fragaria vesca)

Vladimir Shulaev et al.

NATURE GENETICS (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Article Biochemical Research Methods

Limitations of next-generation genome sequence assembly

Can Alkan et al.

NATURE METHODS (2011)

Review Genetics & Heredity

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

John W. Davey et al.

NATURE REVIEWS GENETICS (2011)

Review Genetics & Heredity

APPLICATIONS OF NEXT-GENERATION SEQUENCING Genome structural variation discovery and genotyping

Can Alkan et al.

NATURE REVIEWS GENETICS (2011)

Article Multidisciplinary Sciences

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

Robert J. Elshire et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

Sante Gnerre et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Reference-guided assembly of four diverse Arabidopsis thaliana genomes

Korbinian Schneeberger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Plant Sciences

Crop genome sequencing: lessons and rationales

Catherine Feuillet et al.

TRENDS IN PLANT SCIENCE (2011)

Review Plant Sciences

Fast-forward genetics enabled by new sequencing technologies

Korbinian Schneeberger et al.

TRENDS IN PLANT SCIENCE (2011)

Article Biochemistry & Molecular Biology

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing

Weibo Xie et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Ecology

Adaptation genomics: the next generation

Jessica Stapley et al.

TRENDS IN ECOLOGY & EVOLUTION (2010)

Article Biotechnology & Applied Microbiology

Whole exome capture in solution with 3 Gbp of data

Matthew N. Bainbridge et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Computational approaches and software tools for genetic linkage map estimation in plants

Jitender Cheema et al.

BRIEFINGS IN BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

High-throughput genotyping by whole-genome resequencing

Xuehui Huang et al.

GENOME RESEARCH (2009)

Article Evolutionary Biology

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

David Haussler et al.

JOURNAL OF HEREDITY (2009)

Review Biochemical Research Methods

Computational methods for discovering structural variation with next-generation sequencing

Paul Medvedev et al.

NATURE METHODS (2009)

Letter Biochemical Research Methods

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

Korbinian Schneeberger et al.

NATURE METHODS (2009)

Article Plant Sciences

Gene Content and Virtual Gene Order of Barley Chromosome 1H

Klaus F. X. Mayer et al.

PLANT PHYSIOLOGY (2009)

Article Multidisciplinary Sciences

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Erez Lieberman-Aiden et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

Nathan A. Baird et al.

PLOS ONE (2008)

Article Genetics & Heredity

Genome-wide in situ exon capture for selective resequencing

Emily Hodges et al.

NATURE GENETICS (2007)

Review Genetics & Heredity

Structural variation in the human genome

L Feuk et al.

NATURE REVIEWS GENETICS (2006)

Article Plant Sciences

GrainGenes 2.0. An improved resource for the small-grains community

V Carollo et al.

PLANT PHYSIOLOGY (2005)

Review Biochemistry & Molecular Biology

Evolution of DNA sequence nonhomologies among maize inbreds

S Brunner et al.

PLANT CELL (2005)

Review Genetics & Heredity

The power and promise of population genomics: From genotyping to genome typing

G Luikart et al.

NATURE REVIEWS GENETICS (2003)