Related references
Note: Only part of the references are listed.Selective and Genetic Constraints on Pneumococcal Serotype Switching
Nicholas J. Croucher et al.
PLOS GENETICS (2015)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
NUCLEIC ACIDS RESEARCH (2015)
Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone
Nicholas J. Croucher et al.
BMC BIOLOGY (2014)
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape
Nicholas J. Croucher et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Dense genomic sampling identifies highways of pneumococcal recombination
Claire Chewapreecha et al.
NATURE GENETICS (2014)
Diversification of bacterial genome content through distinct mechanisms over different timescales
Nicholas J. Croucher et al.
NATURE COMMUNICATIONS (2014)
Quality scores for 32,000 genomes
Miriam L. Land et al.
STANDARDS IN GENOMIC SCIENCES (2014)
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model
Andries J. van Tonder et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Population genomics of post-vaccine changes in pneumococcal epidemiology
Nicholas J. Croucher et al.
NATURE GENETICS (2013)
RAxML-Light: a tool for computing terabyte phylogenies
A. Stamatakis et al.
BIOINFORMATICS (2012)
Optimal enzymes for amplifying sequencing libraries
Michael A. Quail et al.
NATURE METHODS (2012)
A High-Resolution View of Genome-Wide Pneumococcal Transformation
Nicholas J. Croucher et al.
PLOS PATHOGENS (2012)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Identification, variation and transcription of pneumococcal repeat sequences
Nicholas J. Croucher et al.
BMC GENOMICS (2011)
Improved Detection of Nasopharyngeal Cocolonization by Multiple Pneumococcal Serotypes by Use of Latex Agglutination or Molecular Serotyping by Microarray
Paul Turner et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2011)
Continued control of pneumococcal disease in the UK - the impact of vaccination
R. A. Gladstone et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2011)
Serotype replacement in disease after pneumococcal vaccination
Daniel M. Weinberger et al.
LANCET (2011)
Rapid Pneumococcal Evolution in Response to Clinical Interventions
Nicholas J. Croucher et al.
SCIENCE (2011)
Clonal replacement among 19A Streptococcus pneumoniae in Massachusetts, prior to 13 valent conjugate vaccination
W. P. Hanage et al.
VACCINE (2011)
Efficient construction of an assembly string graph using the FM-index
Jared T. Simpson et al.
BIOINFORMATICS (2010)
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
David M. Kristensen et al.
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
The Streptococcus pneumoniae Capsule Inhibits Complement Activity and Neutrophil Phagocytosis by Multiple Mechanisms
Catherine Hyams et al.
INFECTION AND IMMUNITY (2010)
Evolution of MRSA During Hospital Transmission and Intercontinental Spread
Simon R. Harris et al.
SCIENCE (2010)
ABACAS: algorithm-based automatic contiguation of assembled sequences
Samuel Assefa et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Role of Conjugative Elements in the Evolution of the Multidrug-Resistant Pandemic Clone Streptococcus pneumoniaeSpain23F ST81
Nicholas J. Croucher et al.
JOURNAL OF BACTERIOLOGY (2009)
Continued Impact of Pneumococcal Conjugate Vaccine on Carriage in Young Children
Susan S. Huang et al.
PEDIATRICS (2009)
Estimation of vaccine efficacy against acquisition of pneumococcal carriage
Hanna Rinta-Kokko et al.
VACCINE (2009)
Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach
Jing Tang et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
Tim Carver et al.
BIOINFORMATICS (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
A large genome center's improvements to the Illumina sequencing system
Michael A. Quail et al.
NATURE METHODS (2008)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Identifying bacterial genes and endosymbiont DNA with Glimmer
Arthur L. Delcher et al.
BIOINFORMATICS (2007)
Diversity and antibiotic resistance among nonvaccine serotypes of Streptococcus pneumoniae carriage isolates in the post-heptavalent conjugate vaccine era
William P. Hanage et al.
JOURNAL OF INFECTIOUS DISEASES (2007)
Effectiveness of seven-valent pneumococcal conjugate vaccine against invasive pneumococcal disease: a matched case-control study
Cynthia G. Whitney et al.
LANCET (2006)
Effect of introduction of the pneumococcal conjugate vaccine on drug-resistant Streptococcus pneumoniae
MH Kyaw et al.
NEW ENGLAND JOURNAL OF MEDICINE (2006)
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes
Stephen D. Bentley et al.
PLOS GENETICS (2006)
Post-PCV7 changes in colonizing pneumococcal serotypes in 16 Massachusetts communities, 2001 and 2004
SS Huang et al.
PEDIATRICS (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Effect of the 7-valent pneumococcal conjugate vaccine on nasopharyngeal colonization by Streptococcus pneumoniae in the first 2 years of life
F Ghaffar et al.
CLINICAL INFECTIOUS DISEASES (2004)
Clinical effectiveness of seven-valent pneumococcal conjugate vaccine (Prevenaro®) against invasive pneurnococcal diseases:: prospects for children in France
S Black et al.
ARCHIVES DE PEDIATRIE (2004)
Immunology of bacterial polysaccharide antigens
A Weintraub
CARBOHYDRATE RESEARCH (2003)
Antibiotic-resistant Streptococcus pneumoniae in the heptavalent pneumococcal conjugate vaccine era:: Predictors of carriage in a multicommunity sample
JA Finkelstein et al.
PEDIATRICS (2003)
Pneumococcal otitis media and pneumococcal vaccines, a historical perspective
R Austrian
VACCINE (2000)
Lack of utility of serotyping multiple colonies for detection of simultaneous nasopharyngeal carriage of different pneumococcal serotypes
RE Huebner et al.
PEDIATRIC INFECTIOUS DISEASE JOURNAL (2000)
Share Paper
