Related references
Note: Only part of the references are listed.Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
Itai Sharon et al.
GENOME RESEARCH (2013)
Surface Microbes in the Neonatal Intensive Care Unit: Changes with Routine Cleaning and over Time
Nicholas A. Bokulich et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs)
Krissi M. Hewitt et al.
PLOS ONE (2013)
Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments
Christopher S. Miller et al.
PLOS ONE (2013)
Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences
Swee Hoe Ong et al.
PLOS ONE (2013)
Studying the microbiology of the indoor environment
Scott T. Kelley et al.
GENOME BIOLOGY (2013)
DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences
Erik S. Wright et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Efficacy of Biocides Used in the Modern Food Industry To Control Salmonella enterica, and Links between Biocide Tolerance and Resistance to Clinically Relevant Antimicrobial Compounds
Orla Condell et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Pyrosequencing-Derived Bacterial, Archaeal, and Fungal Diversity of Spacecraft Hardware Destined for Mars
Myron T. La Duc et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Adaptive and Mutational Resistance: Role of Porins and Efflux Pumps in Drug Resistance
Lucia Fernandez et al.
CLINICAL MICROBIOLOGY REVIEWS (2012)
Emergence of resistance to antibacterial agents: the role of quaternary ammonium compounds-a critical review
Sylvie Buffet-Bataillon et al.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2012)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald et al.
ISME JOURNAL (2012)
Architectural design influences the diversity and structure of the built environment microbiome
Steven W. Kembel et al.
ISME JOURNAL (2012)
The rise of the Enterococcus: beyond vancomycin resistance
Cesar A. Arias et al.
NATURE REVIEWS MICROBIOLOGY (2012)
Exploring Bacterial Diversity in Hospital Environments by GS-FLX Titanium Pyrosequencing
Margarita Poza et al.
PLOS ONE (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Effect of higher minimum inhibitory concentrations of quaternary ammonium compounds in clinical E. coli isolates on antibiotic susceptibilities and clinical outcomes
S. Buffet-Bataillon et al.
JOURNAL OF HOSPITAL INFECTION (2011)
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
Rachel Mackelprang et al.
NATURE (2011)
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant
Michael J. Morowitz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
Christopher S. Miller et al.
GENOME BIOLOGY (2011)
Biofilm Formation by and Multicellular Behavior of Escherichia coli O55:H7, an Atypical Enteropathogenic Strain
Michal Weiss-Muszkat et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
PyNAST: a flexible tool for aligning sequences to a template alignment
J. Gregory Caporaso et al.
BIOINFORMATICS (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Convergent temporal dynamics of the human infant gut microbiota
Pal Trosvik et al.
ISME JOURNAL (2010)
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
Micah Hamady et al.
ISME JOURNAL (2010)
Intestinal Microbial Ecology in Premature Infants Assessed with Non-Culture-Based Techniques
Maka Mshvildadze et al.
JOURNAL OF PEDIATRICS (2010)
STRUCTURAL BIOLOGY Last of the multidrug transporters
Hendrik W. van Veen
NATURE (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Neonatal Outcomes of Extremely Preterm Infants From the NICHD Neonatal Research Network
Barbara J. Stoll et al.
PEDIATRICS (2010)
Redefining the Role of Intestinal Microbes in the Pathogenesis of Necrotizing Enterocolitis
Michael J. Morowitz et al.
PEDIATRICS (2010)
Forensic identification using skin bacterial communities
Noah Fierer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Mechanism of chromosomal transfer of Enterococcus faecalis pathogenicity island, capsule, antimicrobial resistance, and other traits
Janet M. Manson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
Maria G. Dominguez-Bello et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Outbreak of Acinetobacter baumannii in a Neonatal Intensive Care Unit: Antimicrobial Susceptibility and Genotyping Analysis
Arabella Touati et al.
ANNALS OF EPIDEMIOLOGY (2009)
Potentially Pathogenic Bacteria in Shower Water and Air of a Stem Cell Transplant Unit
Sarah D. Perkins et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis
Yunwei Wang et al.
ISME JOURNAL (2009)
Washing toys in a neonatal intensive care unit decreases bacterial load of potential pathogens
R. Naesens et al.
JOURNAL OF HOSPITAL INFECTION (2009)
Outbreak of Serratia marcescens in a neonatal intensive care unit: contaminated unmedicated liquid soap and risk factors
S. Buffet-Bataillon et al.
JOURNAL OF HOSPITAL INFECTION (2009)
Diversity and seasonal dynamics of bacterial community in indoor environment
Helena Rintala et al.
BMC MICROBIOLOGY (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
The Airborne Metagenome in an Indoor Urban Environment
Susannah G. Tringe et al.
PLOS ONE (2008)
A simple, fast, and accurate method of phylogenomic inference
Martin Wu et al.
GENOME BIOLOGY (2008)
Rapid methods to assess sanitizing efficacy of benzalkonium chloride to Listeria monocytogenes biofilms
Nadya A. Romanova et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2007)
SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Elmar Pruesse et al.
NUCLEIC ACIDS RESEARCH (2007)
Genome-wide experimental determination of barriers to horizontal gene transfer
Rotem Sorek et al.
SCIENCE (2007)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Development of the human infant intestinal microbiota
Chana Palmer et al.
PLOS BIOLOGY (2007)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Isolation and characterization of bacteria capable of tolerating the extreme conditions of clean room environments
Myron T. La Duc et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Outbreaks in neonatal intensive care units -: They are not like others
Petra Gastmeier et al.
AMERICAN JOURNAL OF INFECTION CONTROL (2007)
Factors influencing the composition of the intestinal microbiota in early infancy
John Penders et al.
PEDIATRICS (2006)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Bacillus species sepsis in the neonatal intensive care unit
A Adler et al.
JOURNAL OF INFECTION (2005)
Aminoglycoside antibiotics induce bacterial biofilm formation
LR Hoffman et al.
NATURE (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
The National Human Activity Pattern Survey (NHAPS): a resource for assessing exposure to environmental pollutants
NE Klepeis et al.
JOURNAL OF EXPOSURE ANALYSIS AND ENVIRONMENTAL EPIDEMIOLOGY (2001)
Enterobacter cloacae outbreak in the NICU related to disinfected thermometers
RWA van den Berg et al.
JOURNAL OF HOSPITAL INFECTION (2000)