Related references
Note: Only part of the references are listed.HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS
Daniel J. Thornhill et al.
EVOLUTION (2014)
Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals
Kate M. Quigley et al.
PLOS ONE (2014)
A cross-ocean comparison of responses to settlement cues in reef-building corals
Sarah W. Davies et al.
PEERJ (2014)
Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides) from different reef environments
C. D. Kenkel et al.
MOLECULAR ECOLOGY (2013)
Differential abundance analysis for microbial marker-gene surveys
Joseph N. Paulson et al.
NATURE METHODS (2013)
Analysis Tool Web Services from the EMBL-EBI
Hamish McWilliam et al.
NUCLEIC ACIDS RESEARCH (2013)
No Control Genes Required: Bayesian Analysis of qRT-PCR Data
Mikhail V. Matz et al.
PLOS ONE (2013)
Chromera velia is Endosymbiotic in Larvae of the Reef Corals Acropora digitifera and A. tenuis
Vivian R. Cumbo et al.
PROTIST (2013)
Novel polymorphic microsatellite markers for population genetics of the endangered Caribbean star coral, Montastraea faveolata
Sarah W. Davies et al.
MARINE BIODIVERSITY (2013)
Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability
Kathleen M. Morrow et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update
Rod Peakall et al.
BIOINFORMATICS (2012)
The Occurrence of Mixed Infections of Symbiodinium (Dinoflagellata) within Individual Hosts
Scott A. Fay et al.
JOURNAL OF PHYCOLOGY (2012)
A genetics-based description of Symbiodinium minutum sp. nov. and S. psygmophilum sp. nov. (dinophyceae), two dinoflagellates symbiotic with cnidaria
Todd C. Lajeunesse et al.
JOURNAL OF PHYCOLOGY (2012)
Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow
Nicola L. Foster et al.
MOLECULAR ECOLOGY (2012)
ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies
Christian Koetschan et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
Identifying and Characterizing Alternative Molecular Markers for the Symbiotic and Free-Living Dinoflagellate Genus Symbiodinium
Xavier Pochon et al.
PLOS ONE (2012)
Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals
Hollie M. Putnam et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change
Rachel N. Silverstein et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Taxonomic classification of the reef coral family Mussidae (Cnidaria: Anthozoa: Scleractinia)
Ann F. Budd et al.
ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2012)
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
Dent A. Earl et al.
CONSERVATION GENETICS RESOURCES (2012)
Coral thermal tolerance shaped by local adaptation of photosymbionts
E. J. Howells et al.
NATURE CLIMATE CHANGE (2012)
SHRiMP2: Sensitive yet Practical Short Read Mapping
Matei David et al.
BIOINFORMATICS (2011)
Coral-associated bacterial communities on Ningaloo Reef, Western Australia
Janja Ceh et al.
FEMS MICROBIOLOGY ECOLOGY (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Variation in Symbiodinium ITS2 Sequence Assemblages among Coral Colonies
Michael Stat et al.
PLOS ONE (2011)
Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping
Todd C. LaJeunesse et al.
PLOS ONE (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genus Symbiodinium
Todd C. LaJeunesse et al.
JOURNAL OF BIOGEOGRAPHY (2010)
MCMC Methods for Multi-Response Generalized Linear Mixed Models: The MCMCglmm R Package
Jarrod D. Hadfield
JOURNAL OF STATISTICAL SOFTWARE (2010)
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
Manolo Gouy et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Coral host transcriptomic states are correlated with Symbiodinium genotypes
M. K. DeSalvo et al.
MOLECULAR ECOLOGY (2010)
A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i
Xavier Pochon et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
The Relative Significance of Host-Habitat, Depth, and Geography on the Ecology, Endemism, and Speciation of Coral Endosymbionts in the Genus Symbiodinium
J. Christine Finney et al.
MICROBIAL ECOLOGY (2010)
The ITS2 Database III-sequences and structures for phylogeny
Christian Koetschan et al.
NUCLEIC ACIDS RESEARCH (2010)
A new bioinformatics analysis tools framework at EMBL-EBI
Mickael Goujon et al.
NUCLEIC ACIDS RESEARCH (2010)
Potential Costs of Acclimatization to a Warmer Climate: Growth of a Reef Coral with Heat Tolerant vs. Sensitive Symbiont Types
Alison Jones et al.
PLOS ONE (2010)
Genetic Divergence across Habitats in the Widespread Coral Seriatopora hystrix and Its Associated Symbiodinium
Pim Bongaerts et al.
PLOS ONE (2010)
Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance
Todd C. LaJeunesse et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Effects of temperature on gene expression in embryos of the coral Montastraea faveolata
Christian R. Voolstra et al.
BMC GENOMICS (2009)
High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium
E. J. Howells et al.
CORAL REEFS (2009)
Juvenile corals can acquire more carbon from high-performance algal symbionts
N. E. Cantin et al.
CORAL REEFS (2009)
Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata
Shinichi Sunagawa et al.
ISME JOURNAL (2009)
Inferring weak population structure with the assistance of sample group information
Melissa J. Hubisz et al.
MOLECULAR ECOLOGY RESOURCES (2009)
Population structure of Symbiodinium sp associated with the common sea fan, Gorgonia ventalina, in the Florida Keys across distance, depth, and time
Nathan L. Kirk et al.
MARINE BIOLOGY (2009)
Specificity in communities of Symbiodinium in corals from Johnston Atoll
Michael Stat et al.
MARINE ECOLOGY PROGRESS SERIES (2009)
The Roles and Interactions of Symbiont, Host and Environment in Defining Coral Fitness
Jos C. Mieog et al.
PLOS ONE (2009)
Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event
Todd C. LaJeunesse et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
James Robert White et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Correspondence between cold tolerance and temperate biogeography in a western atlantic Symbiodinium (Dinophyta) lineage
Daniel J. Thornhill et al.
JOURNAL OF PHYCOLOGY (2008)
Specificity and stability in high latitude eastern Pacific coral-algal symbioses
T. C. LaJeunesse et al.
LIMNOLOGY AND OCEANOGRAPHY (2008)
In situ photobiology of corals over large depth ranges: A multivariate analysis on the roles of environment, host, and algal symbiont
P. R. Frade et al.
LIMNOLOGY AND OCEANOGRAPHY (2008)
Bleaching susceptibility and mortality of corals are determined by fine-scale differences in symbiont type
E. M. Sampayo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians
Jennifer McCabe Reynolds et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization
A. M. Jones et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
The ITS2 database II: homology modelling RNA structure for molecular systematics
Christian Selig et al.
NUCLEIC ACIDS RESEARCH (2008)
Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates
Daniel J. Thornhill et al.
MOLECULAR ECOLOGY (2007)
Microsatellites from clade B Symbiodinium spp. specialized for Caribbean corals in the genus Madracis
Daniel T. Pettay et al.
MOLECULAR ECOLOGY NOTES (2007)
Niche partitioning of closely related symbiotic dinoflagellates
Eugenia M. Sampayo et al.
MOLECULAR ECOLOGY (2007)
Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals
J. Michael Beman et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
Mattias Jakobsson et al.
BIOINFORMATICS (2007)
Inference of population structure using multilocus genotype data: dominant markers and null alleles
Daniel Falush et al.
MOLECULAR ECOLOGY NOTES (2007)
4SALE -: A tool for synchronous RNA sequence and secondary structure alignment and editing
Philipp N. Seibel et al.
BMC BIOINFORMATICS (2006)
The role of zooxanthellae in the thermal tolerance of corals: a 'nugget of hope' for coral reefs in an era of climate change
Ray Berkelmans et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
The ecological distribution and comparative photobiology of symbiotic dinoflagellates from reef corals in Belize: Potential implications for coral bleaching
Mark E. Warner et al.
LIMNOLOGY AND OCEANOGRAPHY (2006)
The internal transcribed spacer 2 database -: a web server for (not only) low level phylogenetic analyses
Joerg Schultz et al.
NUCLEIC ACIDS RESEARCH (2006)
Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion
DJ Thornhill et al.
MARINE BIOLOGY (2006)
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures
M Wolf et al.
RNA (2005)
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
G Evanno et al.
MOLECULAR ECOLOGY (2005)
Genetic diversity of symbiotic dinoflagellates in the genus Symbiodinium
MA Coffroth et al.
PROTIST (2005)
A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota
J Schultz et al.
RNA (2005)
Species radiations of symbiotic Dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transition (vol 22, pg 570, 2005)
TC LaJeunesse
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Species radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the miocene-pliocene transition
TC LaJeunesse
MOLECULAR BIOLOGY AND EVOLUTION (2005)
DISTRUCT: a program for the graphical display of population structure
NA Rosenberg
MOLECULAR ECOLOGY NOTES (2004)
Fine-scale diversity and specificity in the most prevalent lineage of symbiotic dinoflagellates (Symbiodinium, Dinophyceae) of the Caribbean
SR Santos et al.
MOLECULAR ECOLOGY (2004)
Geographic differences in species boundaries among members of the Montastraea annularis complex based on molecular and morphological markers
H Fukami et al.
EVOLUTION (2004)
Closely related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal and biogeographic gradients
TC LaJeunesse et al.
MARINE ECOLOGY PROGRESS SERIES (2004)
Multispecies microbial mutualisms on coral reefs: The host as a habitat
N Knowlton et al.
AMERICAN NATURALIST (2003)
Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean
TC LaJeunesse et al.
LIMNOLOGY AND OCEANOGRAPHY (2003)
Approximate variance-stabilizing transformations for gene-expression microarray data
DM Rocke et al.
BIOINFORMATICS (2003)
Multiple hybrid formation in natural populations:: Concerted evolution of the internal transcribed spacer of nuclear ribosomal DNA (ITS) in north American Arabis divaricarpa (Brassicaceae)
MA Koch et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs
TC LaJeunesse
MARINE BIOLOGY (2002)
Diversity and distribution of coral-associated bacteria
F Rohwer et al.
MARINE ECOLOGY PROGRESS SERIES (2002)
No habitat correlation of zooxanthellae in the coral genus Madracis on a Curacao reef
OE Diekmann et al.
MARINE ECOLOGY PROGRESS SERIES (2002)
Zooxanthellae of the Montastraea annularis species complex:: Patterns of distribution of four taxa of Symbiodinium on different reefs and across depths
WW Toller et al.
BIOLOGICAL BULLETIN (2001)
Patterns of coral-dinoflagellate associations in Acropora:: significance of local availability and physiology of Symbiodinium strains and host-symbiont selectivity
MJH van Oppen et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2001)
Ecosystems - Reef corals bleach to survive change
AC Baker
NATURE (2001)
Biogeography of two species of Symbiodinium (Freudenthal) inhabiting the intertidal sea anemone Anthopleura elegantissima (Brandt)
TC LaJeunesse et al.
BIOLOGICAL BULLETIN (2000)
Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa
PA Marshall et al.
CORAL REEFS (2000)
Share Paper
