4.3 Article

Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression

Related references

Note: Only part of the references are listed.
Review Biochemistry & Molecular Biology

Modification of Enhancer Chromatin: What, How, and Why?

Eliezer Calo et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription

Michael T. Y. Lam et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

Jie Wang et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biotechnology & Applied Microbiology

Transposable element recruitments in the mammalian placenta: impacts and mechanisms

Deena Emera et al.

BRIEFINGS IN FUNCTIONAL GENOMICS (2012)

Article Biochemistry & Molecular Biology

Genome-wide prediction and analysis of human chromatin boundary elements

Jianrong Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Hematology

Global gene expression analysis of human erythroid progenitors

Alison T. Merryweather-Clarke et al.

BLOOD (2011)

Article Evolutionary Biology

Effect of the Transposable Element Environment of Human Genes on Gene Length and Expression

Daudi Jjingo et al.

GENOME BIOLOGY AND EVOLUTION (2011)

Article Biochemistry & Molecular Biology

c-Jun binding site identification in K562 cells

Minli Li et al.

JOURNAL OF GENETICS AND GENOMICS (2011)

Article Multidisciplinary Sciences

A unique chromatin signature uncovers early developmental enhancers in humans

Alvaro Rada-Iglesias et al.

NATURE (2011)

Review Developmental Biology

Enhancers: The abundance and function of regulatory sequences beyond promoters

Michael Bulger et al.

DEVELOPMENTAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Developmental Silencing of Human ζ-Globin Gene Expression Is Mediated by the Transcriptional Repressor RREB1

Ruei-Lin Chen et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Editorial Material Multidisciplinary Sciences

TRANSCRIPTION Enhancers make non-coding RNA

Bing Ren

NATURE (2010)

Article Multidisciplinary Sciences

Widespread transcription at neuronal activity-regulated enhancers

Tae-Kyung Kim et al.

NATURE (2010)

Article Biotechnology & Applied Microbiology

GREAT improves functional interpretation of cis-regulatory regions

Cory Y. McLean et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

The UCSC Genome Browser database: update 2010

Brooke Rhead et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

ZNF274 Recruits the Histone Methyltransferase SETDB1 to the 3′ Ends of ZNF Genes

Seth Frietze et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Cell Biology

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)

Yong Sun Lee et al.

GENES & DEVELOPMENT (2009)

Article Multidisciplinary Sciences

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Nathaniel D. Heintzman et al.

NATURE (2009)

Article Multidisciplinary Sciences

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister et al.

NATURE (2009)

Article Biotechnology & Applied Microbiology

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

Nalini Polavarapu et al.

BMC GENOMICS (2008)

Review Genetics & Heredity

Opinion - Transposable elements and the evolution of regulatory networks

Cedric Feschotte

NATURE REVIEWS GENETICS (2008)

Article Genetics & Heredity

Human cis natural antisense transcripts initiated by transposable elements

Andrew B. Conley et al.

TRENDS IN GENETICS (2008)

Article Multidisciplinary Sciences

Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis

Victoria V. Lunyak et al.

SCIENCE (2007)

Article Multidisciplinary Sciences

Genome-wide mapping of in vivo protein-DNA interactions

David S. Johnson et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

PReMod: a database of genome-wide mammalian cis-regulatory module predictions

Vincent Ferretti et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biology

Transposable element derived DNaseI-hypersensitive sites in the human genome

Leonardo Marino-Ramirez et al.

BIOLOGY DIRECT (2006)

Article Biochemistry & Molecular Biology

MEME: discovering and analyzing DNA and protein sequence motifs

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

A high-resolution map of active promoters in the human genome

TH Kim et al.

NATURE (2005)

Article Biotechnology & Applied Microbiology

Promoter features related to tissue specificity as measured by Shannon entropy

J Schug et al.

GENOME BIOLOGY (2005)

Article Multidisciplinary Sciences

A gene atlas of the mouse and human protein-encoding transcriptomes

AI Su et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Medicine, General & Internal

Alu and L1 retroelements are correlated with the tissue extent and peak rate of gene expression, respectively

TM Kim et al.

JOURNAL OF KOREAN MEDICAL SCIENCE (2004)

Article Biochemistry & Molecular Biology

The UCSC Table Browser data retrieval tool

D Karolchik et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Genetics & Heredity

Origin of a substantial fraction of human regulatory sequences from transposable elements

IK Jordan et al.

TRENDS IN GENETICS (2003)

Review Multidisciplinary Sciences

The sequence of the human genome

JC Venter et al.

SCIENCE (2001)

Review Multidisciplinary Sciences

Initial sequencing and analysis of the human genome

ES Lander et al.

NATURE (2001)