Related references
Note: Only part of the references are listed.Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Feature-by-Feature - Evaluating De Novo Sequence Assembly
Francesco Vezzi et al.
PLOS ONE (2012)
Mauve Assembly Metrics
Aaron E. Darling et al.
BIOINFORMATICS (2011)
Limitations of next-generation genome sequence assembly
Can Alkan et al.
NATURE METHODS (2011)
A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies
Wenyu Zhang et al.
PLOS ONE (2011)
Comparing De Novo Genome Assembly: The Long and Short of It
Giuseppe Narzisi et al.
PLOS ONE (2011)
Improving RNA-Seq expression estimates by correcting for fragment bias
Adam Roberts et al.
GENOME BIOLOGY (2011)
De novo assembly of human genomes with massively parallel short read sequencing
Ruiqiang Li et al.
GENOME RESEARCH (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing
Niranjan Nagarajan et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
Maximum Likelihood Genome Assembly
Paul Medvedev et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
Scott DiGuistini et al.
GENOME BIOLOGY (2009)
ALLPATHS: De novo assembly of whole-genome shotgun microreads
Jonathan Butler et al.
GENOME RESEARCH (2008)
Mapping short DNA sequencing reads and calling variants using mapping quality scores
Heng Li et al.
GENOME RESEARCH (2008)
De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
David Hernandez et al.
GENOME RESEARCH (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
Juliane C. Dohm et al.
NUCLEIC ACIDS RESEARCH (2008)
Single-molecule DNA sequencing of a viral genome
Timothy D. Harris et al.
SCIENCE (2008)
Genome assembly forensics: finding the elusive mis-assembly
Adam M. Phillippy et al.
GENOME BIOLOGY (2008)
Extending assembly of short DNA sequences to handle error
William R. Jeck et al.
BIOINFORMATICS (2007)
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
Juliane C. Dohm et al.
GENOME RESEARCH (2007)
Assembling millions of short DNA sequences using SSAKE
Rene L. Warren et al.
BIOINFORMATICS (2007)
Striped Smith-Waterman speeds database searches six times over other SIMD implementations
Michael Farrar
BIOINFORMATICS (2007)
Fast algorithms for large-scale genome alignment and comparison
AL Delcher et al.
NUCLEIC ACIDS RESEARCH (2002)
An Eulerian path approach to DNA fragment assembly
PA Pevzner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
A whole-genome assembly of Drosophila
EW Myers et al.
SCIENCE (2000)