4.4 Article

Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

NCBI GEO: archive for functional genomics data sets-update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Genetics & Heredity

Deciphering the transcriptional cis-regulatory code

J. Omar Yanez-Cuna et al.

TRENDS IN GENETICS (2013)

Article Biotechnology & Applied Microbiology

Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster

Matthew Slattery et al.

BRIEFINGS IN FUNCTIONAL GENOMICS (2012)

Article Biochemistry & Molecular Biology

A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

Guillaume Junion et al.

Article Developmental Biology

crinkled reveals a new role for Wingless signaling in Drosophila denticle formation

Amy Bejsovec et al.

DEVELOPMENT (2012)

Article Biochemistry & Molecular Biology

The cis-regulatory code of Hox function in Drosophila

Sebastian Sorge et al.

EMBO JOURNAL (2012)

Review Genetics & Heredity

Transcription factors: from enhancer binding to developmental control

Francois Spitz et al.

NATURE REVIEWS GENETICS (2012)

Article Biochemistry & Molecular Biology

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules

Carl Herrmann et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Cell Biology

Effectors of tridimensional cell morphogenesis and their evolution

Helene Chanut-Delalande et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins

Matthew Slattery et al.

Article Multidisciplinary Sciences

Morphological evolution caused by many subtle-effect substitutions in regulatory DNA

Nicolas Frankel et al.

NATURE (2011)

Article Multidisciplinary Sciences

A cis-regulatory map of the Drosophila genome

Nicolas Negre et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Deciphering the genome's regulatory code: The many languages of DNA

Jens Rister et al.

BIOESSAYS (2010)

Review Biochemistry & Molecular Biology

Transcriptional Enhancers in Animal Development and Evolution

Mike Levine

CURRENT BIOLOGY (2010)

Article Biochemistry & Molecular Biology

A cis-Regulatory Signature in Ascidians and Flies, Independent of Transcription Factor Binding Sites

Pierre Khoueiry et al.

CURRENT BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Shadow Enhancers Foster Robustness of Drosophila Gastrulation

Michael W. Perry et al.

CURRENT BIOLOGY (2010)

Article Multidisciplinary Sciences

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

Nicolas Frankel et al.

NATURE (2010)

Article Multidisciplinary Sciences

Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny

Herve Rouault et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Robert P. Zinzen et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Organization of developmental enhancers in the Drosophila embryo

Dmitri Papatsenko et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Anatomy & Morphology

Expression of the Drosophila secreted cuticle protein 73 (dsc73) requires shavenbaby

Deborah J. Andrew et al.

DEVELOPMENTAL DYNAMICS (2008)

Article Multidisciplinary Sciences

Predicting expression patterns from regulatory sequence in Drosophila segmentation

Eran Segal et al.

NATURE (2008)

Article Multidisciplinary Sciences

Shadow enhancers as a source of evolutionary novelty

Joung-Woo Hong et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

Evolution Acts on Enhancer Organization to Fine-Tune Gradient Threshold Readouts

Justin Crocker et al.

PLOS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

Xiao-Yong Li et al.

PLOS BIOLOGY (2008)

Editorial Material Genetics & Heredity

A Closer Look at the eve Stripe 2 Enhancers of Drosophila and Themira

Justin Crocker et al.

PLOS GENETICS (2008)

Letter Biochemistry & Molecular Biology

A rationale for the enhanceosome and other evolutionarily constrained enhancers

Dmitri Papatsenko et al.

CURRENT BIOLOGY (2007)

Article Multidisciplinary Sciences

Functional architecture and evolution of transcriptional elements that drive gene coexpression

Christopher D. Brown et al.

SCIENCE (2007)

Article Cell Biology

The molecular signature and cis-regulatory architecture of a C-elegans gustatory neuron

John F. Etchberger et al.

GENES & DEVELOPMENT (2007)

Article Biotechnology & Applied Microbiology

Identification of novel regulatory factor X (RFX) target genes by comparative genomics in Drosophila species

Anne Laurencon et al.

GENOME BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Shavenbaby couples patterning to epidermal cell shape control

Helene Chanut-Delalande et al.

PLOS BIOLOGY (2006)

Review Cell Biology

Genomic regulatory networks and animal development

A Stathopoulos et al.

DEVELOPMENTAL CELL (2005)

Article Multidisciplinary Sciences

Coordinate enhancers share common organizational features in the Drosophila genome

A Erives et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Transcriptional control in the segmentation gene network of Drosophila

MD Schroeder et al.

PLOS BIOLOGY (2004)

Review Developmental Biology

Genetic control of epidermis differentiation in Drosophila

F Payre

INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2004)

Article Developmental Biology

A regulatory code for neurogenic gene expression in the Drosophila embryo

M Markstein et al.

DEVELOPMENT (2004)

Review Developmental Biology

The Drosophila bZIP transcription factor Vrille is involved in hair and cell growth

S Szuplewski et al.

DEVELOPMENT (2003)

Article Biochemistry & Molecular Biology

Cluster-Buster: finding dense clusters of motifs in DNA sequences

MC Frith et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Multidisciplinary Sciences

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

BP Berman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

M Markstein et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)