Related references
Note: Only part of the references are listed.Ensembl 2011
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2011)
High-throughput DNA sequencing - concepts and limitations
Martin Kircher et al.
BIOESSAYS (2010)
RNA-Seq gene expression estimation with read mapping uncertainty
Bo Li et al.
BIOINFORMATICS (2010)
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
James H. Bullard et al.
BMC BIOINFORMATICS (2010)
A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling
James R. Bradford et al.
BMC GENOMICS (2010)
RNA-seq: from technology to biology
Samuel Marguerat et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2010)
Understanding mechanisms underlying human gene expression variation with RNA sequencing
Joseph K. Pickrell et al.
NATURE (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
Mitchell Guttman et al.
NATURE BIOTECHNOLOGY (2010)
Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome
Loren Hansen et al.
NUCLEIC ACIDS RESEARCH (2010)
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
Kin Fai Au et al.
NUCLEIC ACIDS RESEARCH (2010)
A two-parameter generalized Poisson model to improve the analysis of RNA-seq data
Sudeep Srivastava et al.
NUCLEIC ACIDS RESEARCH (2010)
rQuant.web: a tool for RNA-Seq-based transcript quantitation
Regina Bohnert et al.
NUCLEIC ACIDS RESEARCH (2010)
Modeling non-uniformity in short-read rates in RNA-Seq data
Jun Li et al.
GENOME BIOLOGY (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
Statistical inferences for isoform expression in RNA-Seq
Hui Jiang et al.
BIOINFORMATICS (2009)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
Christopher D. Armour et al.
NATURE METHODS (2009)
NCBI Reference Sequences: current status, policy and new initiatives
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Direct multiplexed measurement of gene expression with color-coded probe pairs
Gary K. Geiss et al.
NATURE BIOTECHNOLOGY (2008)
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Leming Shi et al.
NATURE BIOTECHNOLOGY (2006)