Journal
GENOME BIOLOGY
Volume 11, Issue 2, Pages -Publisher
BMC
DOI: 10.1186/gb-2010-11-2-r22
Keywords
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Funding
- GIS
- A*STAR scholarship
- L'Oreal-UNESCO For Women In Science National Fellowship
- NIH ENCODE [R01 HG004456-01, R01HG003521-01, 1U54HG004557-01]
- NATIONAL HUMAN GENOME RESEARCH INSTITUTE [U54HG004557, R01HG003521, R01HG004456] Funding Source: NIH RePORTER
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Chromatin interaction analysis with paired-end tag sequencing (ChIA- PET) is a new technology to study genome-wide long-range chromatin interactions bound by protein factors. Here we present ChIA-PET Tool, a software package for automatic processing of ChIA- PET sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser. ChIA- PET Tool is fast, accurate, comprehensive, user-friendly, and open source (available at http://chiapet.gis.a-star.edu.sg).
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