Journal
GENOME BIOLOGY
Volume 11, Issue 10, Pages -Publisher
BMC
DOI: 10.1186/gb-2010-11-10-r104
Keywords
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Funding
- Yale University Biomedical High Performance Computing Center
- NIH [RR19895]
- National Cancer Institute [R01CA125612]
- National Human Genome Research Institute [5R44HG004237]
- Prostate Cancer Foundation
- Breslin Foundation
- NATIONAL CANCER INSTITUTE [R01CA125612] Funding Source: NIH RePORTER
- NATIONAL CENTER FOR RESEARCH RESOURCES [S10RR019895] Funding Source: NIH RePORTER
- NATIONAL HUMAN GENOME RESEARCH INSTITUTE [R44HG004237] Funding Source: NIH RePORTER
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We have developed FusionSeq to identify fusion transcripts from paired-end RNA-sequencing. FusionSeq includes filters to remove spurious candidate fusions with artifacts, such as misalignment or random pairing of transcript fragments, and it ranks candidates according to several statistics. It also has a module to identify exact sequences at breakpoint junctions. FusionSeq detected known and novel fusions in a specially sequenced calibration data set, including eight cancers with and without known rearrangements.
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