4.7 Article

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

A Bacterial Type III Secretion Assay for Delivery of Fungal Effector Proteins into Wheat

Narayana M. Upadhyaya et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2014)

Article Multidisciplinary Sciences

Effector Specialization in a Lineage of the Irish Potato Famine Pathogen

Suomeng Dong et al.

SCIENCE (2014)

Article Plant Sciences

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

Adnane Nemri et al.

FRONTIERS IN PLANT SCIENCE (2014)

Article Biotechnology & Applied Microbiology

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

Jana Sperschneider et al.

BMC GENOMICS (2013)

Article Biochemistry & Molecular Biology

Coevolution and Life Cycle Specialization of Plant Cell Wall Degrading Enzymes in a Hemibiotrophic Pathogen

Patrick C. Brunner et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Microbiology

Filamentous plant pathogen effectors in action

Martha C. Giraldo et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Multidisciplinary Sciences

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing

Diana P. Garnica et al.

PLOS ONE (2013)

Editorial Material Multidisciplinary Sciences

Right-Sizing Stem-Rust Research

P. G. Pardey et al.

SCIENCE (2013)

Article Microbiology

Genome Sequences of Six Wheat-Infecting Fusarium Species Isolates

Paula M. Moolhuljzen et al.

GENOME ANNOUNCEMENTS (2013)

Review Microbiology

Genome evolution in filamentous plant pathogens: why bigger can be better

Sylvain Raffaele et al.

NATURE REVIEWS MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

The Genome Portal of the Department of Energy Joint Genome Institute

Igor V. Grigoriev et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Plant Sciences

The Emergence of Ug99 Races of the Stem Rust Fungus is a Threat to World Wheat Production

Ravi P. Singh et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 49 (2011)

Review Cell Biology

The role of effectors of biotrophic and hemibiotrophic fungi in infection

Markus Koeck et al.

CELLULAR MICROBIOLOGY (2011)

Letter Biochemical Research Methods

SignalP 4.0: discriminating signal peptides from transmembrane regions

Thomas Nordahl Petersen et al.

NATURE METHODS (2011)

Article Biochemistry & Molecular Biology

HMMER web server: interactive sequence similarity searching

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sebastien Duplessis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

ETE: a python Environment for Tree Exploration

Jaime Huerta-Cepas et al.

BMC BIOINFORMATICS (2010)

Review Plant Sciences

Plants versus pathogens: an evolutionary arms race

Jonathan P. Anderson et al.

FUNCTIONAL PLANT BIOLOGY (2010)

Article Biochemistry & Molecular Biology

The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection

William Fletcher et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Review Genetics & Heredity

Plant immunity: towards an integrated view of plant-pathogen interactions

Peter N. Dodds et al.

NATURE REVIEWS GENETICS (2010)

Article Biochemistry & Molecular Biology

Diversity and Evolution of Effector Loci in Natural Populations of the Plant Pathogen Melampsora lini

Luke G. Barrett et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Review Plant Sciences

Evolution of prokaryotic and eukaryotic virulence effectors

Wenbo Ma et al.

CURRENT OPINION IN PLANT BIOLOGY (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

WoLF PSORT: protein localization predictor

Paul Horton et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Plant Sciences

Geographical variation and positive diversifying selection in the host-specific toxin SnToxA

Eva H. Stukenbrock et al.

MOLECULAR PLANT PATHOLOGY (2007)

Article Biotechnology & Applied Microbiology

PyCogent: a toolkit for making sense from sequence

Rob Knight et al.

GENOME BIOLOGY (2007)

Article Multidisciplinary Sciences

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

Joerg Kaemper et al.

NATURE (2006)

Article Multidisciplinary Sciences

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

Peter N. Dodds et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Haustorially expressed secreted proteins from flax rust are highly enriched for avirulence elicitors

AM Catanzariti et al.

PLANT CELL (2006)

Article Multidisciplinary Sciences

An algorithm for progressive multiple alignment of sequences with insertions

A Löytynoja et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Bayes empirical Bayes inference of amino acid sites under positive selection

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Correction Biochemistry & Molecular Biology

Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans (vol 22, pg 659, 2005)

ZY Liu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans

ZY Liu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Plant Sciences

Stem rust of small grains and grasses caused by Puccinia graminis

KJ Leonard et al.

MOLECULAR PLANT PATHOLOGY (2005)

Article Biochemistry & Molecular Biology

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Biochemistry & Molecular Biology

An efficient algorithm for large-scale detection of protein families

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2000)