4.8 Article

Human T cell receptor occurrence patterns encode immune history, genetic background, an receptor specificity

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

Mikhail Shugay et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

MAIT cell clonal expansion and TCR repertoire shaping in human volunteers challenged with Salmonella Paratyphi A

Lauren J. Howson et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

High-throughput immune repertoire analysis with IGoR

Quentin Marcou et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Quantifiable predictive features define epitope-specific T cell receptor repertoires

Pradyot Dash et al.

NATURE (2017)

Article Multidisciplinary Sciences

Identifying specificity groups in the T cell receptor repertoire

Jacob Glanville et al.

NATURE (2017)

Article Biochemistry & Molecular Biology

Broad TCR repertoire and diverse structural solutions for recognition of an immunodominant CD8+T cell epitope

InYoung Song et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Review Biotechnology & Applied Microbiology

Advanced Methodologies in High-Throughput Sequencing of Immune Repertoires

Simon Friedensohn et al.

TRENDS IN BIOTECHNOLOGY (2017)

Article Multidisciplinary Sciences

Structural and regulatory diversity shape HLA-C protein expression levels

Gurman Kaur et al.

NATURE COMMUNICATIONS (2017)

Article Biochemistry & Molecular Biology

Broad TCR repertoire and diverse structural solutions for recognition of an immunodominant CD8+T cell epitope

InYoung Song et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemical Research Methods

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

Mikhail V. Pogorelyy et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Biochemical Research Methods

McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences

Nili Tickotsky et al.

BIOINFORMATICS (2017)

Article Biochemical Research Methods

Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis

Jared Ostmeyer et al.

BMC BIOINFORMATICS (2017)

Article Immunology

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians

Olga V. Britanova et al.

JOURNAL OF IMMUNOLOGY (2016)

Article Genetics & Heredity

Genetic variation in MHC proteins is associated with T cell receptor expression biases

Eilon Sharon et al.

NATURE GENETICS (2016)

Article Multidisciplinary Sciences

How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire

Sydney J. Blevins et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Oncology

T-cell receptor profiling in cancer

Ilan Kirsch et al.

MOLECULAR ONCOLOGY (2015)

Article Cell Biology

High-throughput pairing of T cell receptor α and β sequences

Bryan Howie et al.

SCIENCE TRANSLATIONAL MEDICINE (2015)

Article Biochemistry & Molecular Biology

The IPD and IMGT/HLA database: allele variant databases

James Robinson et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Immunology

Specificity, promiscuity, and precursor frequency in immunoreceptors

Vanessa Venturi et al.

CURRENT OPINION IN IMMUNOLOGY (2013)

Article Biochemical Research Methods

Estimating the ratio of CD4+to CD8+T cells using high-throughput sequence data

Ryan Emerson et al.

JOURNAL OF IMMUNOLOGICAL METHODS (2013)

Article Multidisciplinary Sciences

Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system

Charles Sinclair et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Using synthetic templates to design an unbiased multiplex PCR assay

Christopher S. Carlson et al.

NATURE COMMUNICATIONS (2013)

Review Cell Biology

Determinants of public T cell responses

Hanjie Li et al.

CELL RESEARCH (2012)

Article Multidisciplinary Sciences

MR1 presents microbial vitamin B metabolites to MAIT cells

Lars Kjer-Nielsen et al.

NATURE (2012)

Article Multidisciplinary Sciences

Statistical inference of the generation probability of T-cell receptors from sequence repertoires

Anand Murugan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Structural insights into the editing of germ-line-encoded interactions between T-cell receptor and MHC class II by Vα CDR3

Lu Deng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Immunology

T Cell Allorecognition via Molecular Mimicry

Whitney A. Macdonald et al.

IMMUNITY (2009)

Article Immunology

The molecular basis for public T-cell responses?

Vanessa Venturi et al.

NATURE REVIEWS IMMUNOLOGY (2008)

Article Biochemistry & Molecular Biology

IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes

W Giudicelli et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

Statistical significance for genomewide studies

JD Storey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Review Microbiology

Human parvovirus B19

ED Heegaard et al.

CLINICAL MICROBIOLOGY REVIEWS (2002)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)